NIPY logo
Home · Quickstart · Documentation · Citation · NiPy
Loading

Versions

ReleaseDevel
0.5.3pre-0.6
Download Github

Links

Index

_ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U | V | W | X | Z

_

__init__() (nipype.caching.memory.Memory method)
(nipype.caching.memory.PipeFunc method), [1]
(nipype.interfaces.base.BaseInterface method)
(nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.Bunch method)
(nipype.interfaces.base.CommandLine method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.Interface method)
(nipype.interfaces.base.InterfaceResult method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.StdOutCommandLine method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.Stream method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabCommand method)
(nipype.interfaces.matlab.MatlabInputSpec method)
(nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)
(nipype.pipeline.engine.Workflow method)
(nipype.pipeline.engine.WorkflowBase method)

A

Add
add_class_trait() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
add_nodes() (nipype.pipeline.engine.Workflow method)
add_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
add_trait_category() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
add_trait_listener() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
AddCSVColumn
AffineRegistration
aggregate_outputs() (nipype.interfaces.base.BaseInterface method)
(nipype.interfaces.base.CommandLine method)
(nipype.interfaces.base.Interface method)
(nipype.interfaces.base.StdOutCommandLine method)
(nipype.interfaces.matlab.MatlabCommand method)
all_trait_names() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
Allineate
always_run (nipype.interfaces.base.BaseInterface attribute)
(nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.Interface attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
Analyze2nii
AnalyzeHeader
ApplyDeformations
ApplyMask, [1]
ApplyVolTransform
ApplyWarp
ApplyXfm
arg_error() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
ArtifactDetect
as_ctrait() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
AssertEqual
Automask
AverageNetworks

B

base_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
BaseInterface (class in nipype.interfaces.base)
BaseInterfaceInputSpec (class in nipype.interfaces.base)
BaseTraitedSpec (class in nipype.interfaces.base)
BBRegister
BEDPOSTX
BET
Binarize
BinaryMaths
BRAINSDemonWarp
BRAINSFit
BRAINSResample
BRAINSROIAuto
BrickStat
BSplineDeformableRegistration
BuildTemplate
Bunch (class in nipype.interfaces.base)

C

cache() (nipype.caching.Memory method)
(nipype.caching.memory.Memory method)
Calc
Camino2Trackvis
can_resume (nipype.interfaces.base.BaseInterface attribute)
(nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.Interface attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
Cast
CFFConverter
ChangeDataType
CheckerBoard
class_default_traits_view() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
class_editable_traits() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
class_trait_names() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
class_trait_view() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
class_trait_view_elements() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
class_traits() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
clear_previous_runs() (nipype.caching.Memory method)
(nipype.caching.memory.Memory method)
clear_runs_since() (nipype.caching.Memory method)
(nipype.caching.memory.Memory method)
clone() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)
(nipype.pipeline.engine.Workflow method)
(nipype.pipeline.engine.WorkflowBase method)
clone_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
Cluster
cmd (nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
cmdline (nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
CoherenceAnalyzer
CommandLine (class in nipype.interfaces.base)
CommandLineInputSpec (class in nipype.interfaces.base)
ComputeEigensystem
ComputeFractionalAnisotropy
ComputeMask
ComputeMeanDiffusivity
ComputeSUVBodyWeight
ComputeTensorTrace
Concatenate
ConfidenceConnected
configure_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
Conmap
connect() (nipype.pipeline.engine.Workflow method)
ConstrainedSphericalDeconvolution
ContrastMgr
ConvertXFM
Copy
copy_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
copyable_trait_names() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
Coregister
create_editor() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
CreateMatrix
CreateNifti
CreateNodes
CreateWarped
CurvatureAnisotropicDiffusion

D

DARTEL
DARTELNorm2MNI
DataGrabber
DataSink
Dcm2nii
default_traits_view() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
default_value (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
default_value_type (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
Despike
Detrend
DICOMConvert
DicomToNrrdConverter
dictcopy() (nipype.interfaces.base.Bunch method)
DiffusionTensorEstimation
DiffusionTensorMathematics
DiffusionTensorStreamlineTrack
DiffusionTensorTest
DiffusionWeightedMasking
DilateImage
disconnect() (nipype.pipeline.engine.Workflow method)
Distance
DistanceMap
DT2NIfTI
DTIFit, [1]
DTIRecon
DTITracker
DTLUTGen
dup_arg_error() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
DWI2SphericalHarmonicsImage
DWI2Tensor
dwiNoiseFilter
dwiUNLM
DynamicTraitedSpec (class in nipype.interfaces.base)

E

EddyCorrect
edit_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
editable_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
editor (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
Erode
ErodeImage
error() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
EstimateContrast, [1]
EstimateModel
EstimateResponseForSH
extractNrrdVectorIndex
ExtractROI

F

FactorialDesign
FAST
FEAT
FEATModel
FEATRegister
fileno() (nipype.interfaces.base.Stream method)
FILMGLS
FilterRegressor
Fim
FindTheBiggest
FIRST
FitGLM
FitMSParams
FLAMEO
FLIRT
FmriRealign4d
FNIRT
Fourier
FreeSurferSource
FUGUE
full_info() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
fullname (nipype.pipeline.engine.MapNode attribute)
(nipype.pipeline.engine.Node attribute)
(nipype.pipeline.engine.Workflow attribute)
(nipype.pipeline.engine.WorkflowBase attribute)
Function

G

GenerateWhiteMatterMask
GenWarpFields
get() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.Bunch method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
get_default_value() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
get_editor() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
get_hashval() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
get_matlab_command() (in module nipype.interfaces.matlab)
get_node() (nipype.pipeline.engine.Workflow method)
get_output() (nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)
get_subnodes() (nipype.pipeline.engine.MapNode method)
get_traitsfree() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
get_value() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
GLMFit
gtractAnisotropyMap
gtractAverageBvalues
gtractClipAnisotropy
gtractConcatDwi
gtractCopyImageOrientation
gtractCoRegAnatomy
gtractCoregBvalues
gtractCostFastMarching
gtractImageConformity
gtractInvertBSplineTransform
gtractInvertDeformationField
gtractInvertRigidTransform
gtractResampleAnisotropy
gtractResampleB0
gtractResampleCodeImage
gtractResampleDWIInPlace
gtractTensor
gtractTransformToDeformationField
Gunzip

H

HARDIMat
has_items (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
has_traits_interface() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
hash_exists() (nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)
help() (nipype.interfaces.base.BaseInterface class method)
(nipype.interfaces.base.CommandLine class method)
(nipype.interfaces.base.Interface class method)
(nipype.interfaces.base.StdOutCommandLine class method)
(nipype.interfaces.matlab.MatlabCommand class method)
(nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)

I

IdentityInterface
Image2Voxel
ImageMaths
ImageMeants
ImageStats
info() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
info_text (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
info_trait (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
init() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
inner_traits() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
input_spec (nipype.interfaces.base.BaseInterface attribute)
(nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.Interface attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
InputMultiPath (class in nipype.interfaces.base)
inputs (nipype.pipeline.engine.MapNode attribute)
(nipype.pipeline.engine.Node attribute)
(nipype.pipeline.engine.Workflow attribute)
(nipype.pipeline.engine.WorkflowBase attribute)
Interface (class in nipype.interfaces.base)
interface (nipype.pipeline.engine.MapNode attribute)
(nipype.pipeline.engine.Node attribute)
InterfaceResult (class in nipype.interfaces.base)
IOBase
is_mapped (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
is_valid() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
IsotropicSmooth
items() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.Bunch method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
items_event() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
iteritems() (nipype.interfaces.base.Bunch method)

J

jointLMMSE

K

keyword_error() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)

L

L2Model
Label2Vol
Level1Design, [1]
list_node_names() (nipype.pipeline.engine.Workflow method)
load() (nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)
(nipype.pipeline.engine.Workflow method)
(nipype.pipeline.engine.WorkflowBase method)
load_template() (in module nipype.interfaces.base)

M

MakeDyadicVectors
MapNode (class in nipype.pipeline.engine)
Maskave
MathsCommand
Matlab2CSV
MatlabCommand (class in nipype.interfaces.matlab)
MatlabInputSpec (class in nipype.interfaces.matlab)
MCFLIRT
MeanImage
MedianFilter3D
MELODIC
Memory (class in nipype.caching)
(class in nipype.caching.memory)
Merge, [1], [2]
MergeCNetworks
MergeCSVFiles
metadata (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
missing_arg_error() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
ModelFit
ModifyAffine
MRConvert
MRIConvert
MRIMarchingCubes
MRIsConvert
MRISPreproc
MRITessellate
MRMultiply
MRTransform
MRTrix2TrackVis
MRTrixViewer
MultiImageMaths
MultiPath (class in nipype.interfaces.base)
MultipleRegressDesign
MultipleRegressionDesign

N

NetworkXMetrics
NewSegment
NIfTIDT2Camino
nipype (module)
nipype.algorithms.misc (module)
nipype.algorithms.modelgen (module)
nipype.caching.memory (module)
nipype.interfaces.base (module)
nipype.interfaces.cmtk.cmtk (module)
nipype.interfaces.cmtk.nx (module)
nipype.interfaces.cmtk.parcellation (module)
nipype.interfaces.io (module)
nipype.interfaces.matlab (module)
nipype.interfaces.mrtrix.convert (module)
nipype.interfaces.mrtrix.tensors (module)
nipype.pipeline.engine (module)
nipype.pkg_info (module)
nipype.workflows.dmri.camino.connectivity_mapping (module)
nipype.workflows.dmri.camino.diffusion (module)
nipype.workflows.dmri.camino.group_connectivity (module)
nipype.workflows.dmri.connectivity.group_connectivity (module)
nipype.workflows.dmri.connectivity.nx (module)
nipype.workflows.dmri.fsl.dti (module)
nipype.workflows.dmri.fsl.tbss (module)
nipype.workflows.dmri.mrtrix.connectivity_mapping (module)
nipype.workflows.dmri.mrtrix.diffusion (module)
nipype.workflows.dmri.mrtrix.group_connectivity (module)
nipype.workflows.fmri.fsl.estimate (module)
nipype.workflows.fmri.fsl.preprocess (module)
nipype.workflows.fmri.spm.preprocess (module)
nipype.workflows.misc.utils (module)
nipype.workflows.rsfmri.fsl.resting (module)
nipype.workflows.smri.freesurfer.utils (module)
Node (class in nipype.pipeline.engine)
Normalize
num_subnodes() (nipype.pipeline.engine.MapNode method)

O

ODFRecon
ODFTracker
on_trait_change() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
on_trait_event() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
OneSampleTTest
OneSampleTTestDesign
output_dir() (nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)
output_spec (nipype.interfaces.base.BaseInterface attribute)
(nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.Interface attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
OutputMultiPath (class in nipype.interfaces.base)
outputs (nipype.pipeline.engine.MapNode attribute)
(nipype.pipeline.engine.Node attribute)
(nipype.pipeline.engine.Workflow attribute)
(nipype.pipeline.engine.WorkflowBase attribute)
Overlap
Overlay

P

PairedTTestDesign
Parcellate
ParseDICOMDir
PickAtlas
PicoPDFs
PipeFunc (class in nipype.caching.memory), [1]
PlotMotionParams
PlotTimeSeries
PowerSpectrum
PRELUDE
print_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
ProbabilisticSphericallyDeconvolutedStreamlineTrack
ProbTrackX
ProcStreamlines
ProjThresh

R

raise_exception() (nipype.interfaces.base.CommandLine method)
(nipype.interfaces.base.StdOutCommandLine method)
(nipype.interfaces.matlab.MatlabCommand method)
Randomise
read() (nipype.interfaces.base.Stream method)
read_log() (in module nipype.caching.memory)
Realign
ReconAll
Refit
remove_nodes() (nipype.pipeline.engine.Workflow method)
remove_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
remove_trait_listener() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
Rename
repr() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
Resample, [1]
ResampleDTI
reset_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
result (nipype.pipeline.engine.MapNode attribute)
(nipype.pipeline.engine.Node attribute)
return_error() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
rm_all_but() (in module nipype.caching.memory)
RobustRegister
ROIGen
ROIStats
run() (nipype.interfaces.base.BaseInterface method)
(nipype.interfaces.base.CommandLine method)
(nipype.interfaces.base.Interface method)
(nipype.interfaces.base.StdOutCommandLine method)
(nipype.interfaces.matlab.MatlabCommand method)
(nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)
(nipype.pipeline.engine.Workflow method)
run_command() (in module nipype.interfaces.base)

S

SampleToSurface
save() (nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)
(nipype.pipeline.engine.Workflow method)
(nipype.pipeline.engine.WorkflowBase method)
Segment
SegStats
Select
set() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.Bunch method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
set_default_matlab_cmd() (nipype.interfaces.matlab.MatlabCommand class method)
set_default_mfile() (nipype.interfaces.matlab.MatlabCommand class method)
set_default_paths() (nipype.interfaces.matlab.MatlabCommand class method)
set_input() (nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)
set_trait_dispatch_handler() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
set_value() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
SimpleThreshold
SkullStrip
Slicer
SlicerCommandLine
SliceTimer
SliceTiming
SMM
Smooth, [1], [2]
SmoothEstimate
SpatialFilter
SpecifyModel
SpecifySparseModel
SpecifySPMModel
SphericallyDeconvolutedStreamlineTrack
SplineFilter
Split, [1]
SQLiteSink
StdOutCommandLine (class in nipype.interfaces.base)
StdOutCommandLineInputSpec (class in nipype.interfaces.base)
StimulusCorrelation
Stream (class in nipype.interfaces.base)
StreamlineTrack
SurfaceSmooth
SurfaceSnapshots
SurfaceTransform
SUSAN
SwapDimensions
sync_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
SynthesizeFLASH

T

TCat
TCorrelate
TemporalFilter
Tensor2ApparentDiffusion
Tensor2FractionalAnisotropy
Tensor2Vector
Threshold, [1], [2]
ThresholdStatistics
To3D
Track
TrackBallStick
TrackBayesDirac
TrackBootstrap
TrackDensityMap
TrackDT
TrackPICo
Tracks2Prob
Trackvis2Camino
TractShredder
TractSkeleton
trait() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_context() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_get() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_items_event() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_monitor() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
trait_names() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_property_changed() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_set() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_setq() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_subclasses() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
trait_view() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_view_elements() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_views() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
TraitedSpec (class in nipype.interfaces.base)
traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
traits_init() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
traits_inited() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
TShift
TSNR
TStat
TwoSampleTTestDesign

U

UnaryMaths
UnpackSDICOMDir
update() (nipype.interfaces.base.Bunch method)
(nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)

V

validate() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
validate_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
VBRAINSDemonWarp
VecReg
version (nipype.interfaces.base.InterfaceResult attribute)
Volreg
VtkStreamlines

W

Warp
WarpImageMultiTransform
Workflow (class in nipype.pipeline.engine)
WorkflowBase (class in nipype.pipeline.engine)
wrappers (nipype.interfaces.base.BaseInterfaceInputSpec attribute)
(nipype.interfaces.base.BaseTraitedSpec attribute)
(nipype.interfaces.base.CommandLineInputSpec attribute)
(nipype.interfaces.base.DynamicTraitedSpec attribute)
(nipype.interfaces.base.StdOutCommandLineInputSpec attribute)
(nipype.interfaces.base.TraitedSpec attribute)
(nipype.interfaces.matlab.MatlabInputSpec attribute)
write_graph() (nipype.pipeline.engine.Workflow method)
write_hierarchical_dotfile() (nipype.pipeline.engine.Workflow method)
write_report() (nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)

X

XFibres
XNATSink
XNATSource

Z

ZCutUp