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Interfaces and Algorithms
¶
Release:
0.5.3
Date:
June 21, 2012, 13:59 PDT
nipype
check_for_updates()
algorithms.misc
AddCSVColumn
CreateNifti
Distance
Gunzip
Matlab2CSV
MergeCSVFiles
ModifyAffine
Overlap
PickAtlas
SimpleThreshold
TSNR
makefmtlist()
maketypelist()
matlab2csv()
merge_csvs()
remove_identical_paths()
replaceext()
algorithms.modelgen
SpecifyModel
SpecifySPMModel
SpecifySparseModel
gcd()
gen_info()
orth()
scale_timings()
spm_hrf()
algorithms.rapidart
ArtifactDetect
StimulusCorrelation
interfaces.afni.preprocess
Allineate
Automask
BrickStat
Calc
Copy
Despike
Detrend
Fim
Fourier
Maskave
Merge
ROIStats
Refit
Resample
SkullStrip
TCat
TCorrelate
TShift
TStat
To3D
Volreg
Warp
ZCutUp
interfaces.ants.normalize
BuildTemplate
GenWarpFields
WarpImageMultiTransform
interfaces.camino.connectivity
Conmap
interfaces.camino.convert
AnalyzeHeader
DT2NIfTI
Image2Voxel
NIfTIDT2Camino
ProcStreamlines
TractShredder
VtkStreamlines
interfaces.camino.dti
ComputeEigensystem
ComputeFractionalAnisotropy
ComputeMeanDiffusivity
ComputeTensorTrace
DTIFit
DTLUTGen
ModelFit
PicoPDFs
Track
TrackBallStick
TrackBayesDirac
TrackBootstrap
TrackDT
TrackPICo
interfaces.camino2trackvis.convert
Camino2Trackvis
Trackvis2Camino
interfaces.cmtk.cmtk
CreateMatrix
CreateNodes
ROIGen
cmat()
create_allpoints_cmat()
create_endpoints_array()
create_nodes()
get_connectivity_matrix()
get_rois_crossed()
length()
save_fibers()
interfaces.cmtk.convert
CFFConverter
MergeCNetworks
interfaces.cmtk.nx
AverageNetworks
NetworkXMetrics
add_dicts_by_key()
add_edge_data()
add_node_data()
average_networks()
compute_dict_measures()
compute_edge_measures()
compute_network_measures()
compute_node_measures()
compute_singlevalued_measures()
fix_keys_for_gexf()
read_unknown_ntwk()
remove_all_edges()
interfaces.cmtk.parcellation
Parcellate
create_annot_label()
create_roi()
create_wm_mask()
crop_and_move_datasets()
interfaces.dcm2nii
Dcm2nii
interfaces.diffusion_toolkit.dti
DTIRecon
DTITracker
interfaces.diffusion_toolkit.odf
HARDIMat
ODFRecon
ODFTracker
interfaces.diffusion_toolkit.postproc
SplineFilter
interfaces.dipy.tracks
TrackDensityMap
interfaces.dynamic_slicer
SlicerCommandLine
interfaces.freesurfer.model
Binarize
Concatenate
GLMFit
Label2Vol
MRISPreproc
OneSampleTTest
SegStats
interfaces.freesurfer.preprocess
ApplyVolTransform
BBRegister
DICOMConvert
FitMSParams
MRIConvert
ParseDICOMDir
ReconAll
Resample
RobustRegister
Smooth
SynthesizeFLASH
UnpackSDICOMDir
interfaces.freesurfer.utils
ApplyMask
MRIMarchingCubes
MRITessellate
MRIsConvert
SampleToSurface
SurfaceSmooth
SurfaceSnapshots
SurfaceTransform
interfaces.fsl.dti
BEDPOSTX
DTIFit
DistanceMap
EddyCorrect
FindTheBiggest
MakeDyadicVectors
ProbTrackX
ProjThresh
TractSkeleton
VecReg
XFibres
interfaces.fsl.maths
ApplyMask
BinaryMaths
ChangeDataType
DilateImage
ErodeImage
IsotropicSmooth
MathsCommand
MeanImage
MultiImageMaths
SpatialFilter
TemporalFilter
Threshold
UnaryMaths
interfaces.fsl.model
Cluster
ContrastMgr
FEAT
FEATModel
FEATRegister
FILMGLS
FLAMEO
L2Model
Level1Design
MELODIC
MultipleRegressDesign
Randomise
SMM
SmoothEstimate
interfaces.fsl.preprocess
ApplyWarp
ApplyXfm
BET
FAST
FIRST
FLIRT
FNIRT
FUGUE
MCFLIRT
PRELUDE
SUSAN
SliceTimer
interfaces.fsl.utils
ConvertXFM
ExtractROI
FilterRegressor
ImageMaths
ImageMeants
ImageStats
Merge
Overlay
PlotMotionParams
PlotTimeSeries
PowerSpectrum
Slicer
Smooth
Split
SwapDimensions
interfaces.io
DataGrabber
DataSink
FreeSurferSource
IOBase
SQLiteSink
XNATSink
XNATSource
add_traits()
copytree()
push_file()
quote_id()
unquote_id()
interfaces.mrtrix.convert
MRTrix2TrackVis
read_mrtrix_header()
read_mrtrix_streamlines()
read_mrtrix_tracks()
transform_to_affine()
interfaces.mrtrix.preprocess
DWI2Tensor
Erode
GenerateWhiteMatterMask
MRConvert
MRMultiply
MRTransform
MRTrixViewer
MedianFilter3D
Tensor2ApparentDiffusion
Tensor2FractionalAnisotropy
Tensor2Vector
Threshold
interfaces.mrtrix.tensors
ConstrainedSphericalDeconvolution
DWI2SphericalHarmonicsImage
EstimateResponseForSH
concat_files()
interfaces.mrtrix.tracking
DiffusionTensorStreamlineTrack
ProbabilisticSphericallyDeconvolutedStreamlineTrack
SphericallyDeconvolutedStreamlineTrack
StreamlineTrack
Tracks2Prob
interfaces.nipy.model
EstimateContrast
FitGLM
interfaces.nipy.preprocess
ComputeMask
FmriRealign4d
interfaces.nitime.analysis
CoherenceAnalyzer
interfaces.slicer.cli_modules
Add
AffineRegistration
BRAINSDemonWarp
BRAINSFit
BRAINSROIAuto
BRAINSResample
BSplineDeformableRegistration
Cast
CheckerBoard
ComputeSUVBodyWeight
ConfidenceConnected
CurvatureAnisotropicDiffusion
DicomToNrrdConverter
DiffusionTensorEstimation
DiffusionTensorMathematics
DiffusionTensorTest
DiffusionWeightedMasking
ResampleDTI
VBRAINSDemonWarp
dwiNoiseFilter
dwiUNLM
extractNrrdVectorIndex
gtractAnisotropyMap
gtractAverageBvalues
gtractClipAnisotropy
gtractCoRegAnatomy
gtractConcatDwi
gtractCopyImageOrientation
gtractCoregBvalues
gtractCostFastMarching
gtractImageConformity
gtractInvertBSplineTransform
gtractInvertDeformationField
gtractInvertRigidTransform
gtractResampleAnisotropy
gtractResampleB0
gtractResampleCodeImage
gtractResampleDWIInPlace
gtractTensor
gtractTransformToDeformationField
jointLMMSE
interfaces.spm.model
EstimateContrast
EstimateModel
FactorialDesign
Level1Design
MultipleRegressionDesign
OneSampleTTestDesign
PairedTTestDesign
Threshold
ThresholdStatistics
TwoSampleTTestDesign
interfaces.spm.preprocess
ApplyDeformations
Coregister
CreateWarped
DARTEL
DARTELNorm2MNI
NewSegment
Normalize
Realign
Segment
SliceTiming
Smooth
interfaces.spm.utils
Analyze2nii
interfaces.utility
AssertEqual
Function
IdentityInterface
Merge
Rename
Select
Split
pkg_info
get_pkg_info()
pkg_commit_hash()
workflows.dmri.camino.connectivity_mapping
create_connectivity_pipeline()
workflows.dmri.camino.diffusion
create_camino_dti_pipeline()
workflows.dmri.camino.group_connectivity
create_group_connectivity_pipeline()
workflows.dmri.connectivity.group_connectivity
concatcsv()
create_average_networks_by_group_workflow()
create_merge_group_network_results_workflow()
create_merge_group_networks_workflow()
create_merge_network_results_by_group_workflow()
create_merge_networks_by_group_workflow()
pullnodeIDs()
workflows.dmri.connectivity.nx
create_cmats_to_csv_pipeline()
create_networkx_pipeline()
workflows.dmri.fsl.dti
create_bedpostx_pipeline()
create_eddy_correct_pipeline()
transpose()
workflows.dmri.fsl.tbss
create_tbss_1_preproc()
create_tbss_4_prestats()
create_tbss_2_reg()
create_tbss_3_postreg()
create_tbss_all()
create_tbss_non_FA()
tbss1_op_string()
tbss4_op_string()
workflows.dmri.mrtrix.connectivity_mapping
create_connectivity_pipeline()
workflows.dmri.mrtrix.diffusion
create_mrtrix_dti_pipeline()
workflows.dmri.mrtrix.group_connectivity
create_group_connectivity_pipeline()
workflows.fmri.fsl.estimate
create_fixed_effects_flow()
create_modelfit_workflow()
create_overlay_workflow()
workflows.fmri.fsl.preprocess
create_featreg_preproc()
create_fsl_fs_preproc()
create_parallelfeat_preproc()
create_susan_smooth()
chooseindex()
getbtthresh()
getmeanscale()
getthreshop()
getusans()
pickfirst()
pickmiddle()
pickvol()
workflows.fmri.spm.preprocess
create_DARTEL_template()
create_spm_preproc()
create_vbm_preproc()
workflows.misc.utils
get_affine()
get_data_dims()
get_vox_dims()
id_list_from_lookup_table()
region_list_from_volume()
select_aparc()
select_aparc_annot()
workflows.rsfmri.fsl.resting
create_realign_flow()
create_resting_preproc()
extract_noise_components()
select_volume()
workflows.smri.freesurfer.utils
create_get_stats_flow()
create_getmask_flow()
create_tessellation_flow()