Package | Description |
---|---|
pal.eval |
Classes for evaluating evolutionary hypothesis (chi-square and likelihood
criteria) and estimating model parameters.
|
Modifier and Type | Class and Description |
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class |
FastLikelihoodCalculator
Title: Fast Likelihood Calculator
Description: A fast likelihood calculator Original code by Matthew Goode. |
class |
GeneralLikelihoodCalculator
Title: General Likelihood Calculator
Description: A General likelihood calculator This calculates the likelihood of an topologically invariant tree (on an unchanging alignment) quickly by remembering partial likelihoods of invariant subtrees, and by essentially generating site patterns for each sub tree. |
class |
SimpleLikelihoodCalculator |