, including all inherited members.
EigenDecomposition(int decompositionCount, int stateCount, int categoryCount, long flags) (defined in beagle::cpu::EigenDecomposition) | beagle::cpu::EigenDecomposition | [inline] |
firstDerivTmp (defined in beagle::cpu::EigenDecomposition) | beagle::cpu::EigenDecomposition | [protected] |
gEigenValues (defined in beagle::cpu::EigenDecomposition) | beagle::cpu::EigenDecomposition | [protected] |
kCategoryCount (defined in beagle::cpu::EigenDecomposition) | beagle::cpu::EigenDecomposition | [protected] |
kEigenDecompCount (defined in beagle::cpu::EigenDecomposition) | beagle::cpu::EigenDecomposition | [protected] |
kFlags (defined in beagle::cpu::EigenDecomposition) | beagle::cpu::EigenDecomposition | [protected] |
kStateCount (defined in beagle::cpu::EigenDecomposition) | beagle::cpu::EigenDecomposition | [protected] |
matrixTmp (defined in beagle::cpu::EigenDecomposition) | beagle::cpu::EigenDecomposition | [protected] |
secondDerivTmp (defined in beagle::cpu::EigenDecomposition) | beagle::cpu::EigenDecomposition | [protected] |
setEigenDecomposition(int eigenIndex, const double *inEigenVectors, const double *inInverseEigenVectors, const double *inEigenValues)=0 (defined in beagle::cpu::EigenDecomposition) | beagle::cpu::EigenDecomposition | [pure virtual] |
updateTransitionMatrices(int eigenIndex, const int *probabilityIndices, const int *firstDerivativeIndices, const int *secondDerivativeIndices, const double *edgeLengths, const double *categoryRates, REALTYPE **transitionMatrices, int count)=0 (defined in beagle::cpu::EigenDecomposition) | beagle::cpu::EigenDecomposition | [pure virtual] |
~EigenDecomposition() (defined in beagle::cpu::EigenDecomposition) | beagle::cpu::EigenDecomposition | [inline, virtual] |