public class HBond extends Bond
Bond.BondSet
Modifier and Type | Field and Description |
---|---|
(package private) float |
energy |
private byte |
paletteID |
private static double |
QConst |
atom1, atom2, colix, mad, myVisibilityFlag, shapeVisibilityFlags
argbsHbondType, BOND_AROMATIC, BOND_AROMATIC_DOUBLE, BOND_AROMATIC_MASK, BOND_AROMATIC_SINGLE, BOND_COVALENT_DOUBLE, BOND_COVALENT_MASK, BOND_COVALENT_QUADRUPLE, BOND_COVALENT_SINGLE, BOND_COVALENT_TRIPLE, BOND_H_CALC, BOND_H_CALC_MASK, BOND_H_MINUS_3, BOND_H_MINUS_4, BOND_H_NUCLEOTIDE, BOND_H_PLUS_2, BOND_H_PLUS_3, BOND_H_PLUS_4, BOND_H_PLUS_5, BOND_H_REGULAR, BOND_HBOND_SHIFT, BOND_HYDROGEN_MASK, BOND_NEW, BOND_ORDER_ANY, BOND_ORDER_NULL, BOND_ORDER_UNSPECIFIED, BOND_PARTIAL_MASK, BOND_PARTIAL01, BOND_PARTIAL12, BOND_PARTIAL23, BOND_PARTIAL32, BOND_STEREO_FAR, BOND_STEREO_MASK, BOND_STEREO_NEAR, BOND_STRUT, BOND_SULFUR_MASK, index, order
Constructor and Description |
---|
HBond(Atom atom1,
Atom atom2,
int order,
float energy) |
HBond(Atom atom1,
Atom atom2,
int order,
short mad,
short colix,
float energy) |
Modifier and Type | Method and Description |
---|---|
float |
getEnergy() |
static int |
getEnergy(double distAH,
double distCH,
double distCD,
double distAD) |
byte |
getPaletteId() |
void |
setPaletteID(byte paletteID) |
deleteAtomReferences, getAtom1, getAtom2, getAtomIndex1, getAtomIndex2, getColix, getColix1, getColix2, getCovalentOrder, getIdentity, getMad, getOrderName, getOrderNumberAsString, getOtherAtom, getOtherAtom, getRadius, getShapeVisibilityFlags, getValence, is, isAromatic, isCovalent, isHydrogen, isHydrogen, isPartial, isStereo, isTranslucent, setColix, setIndex, setMad, setOrder, setShapeVisibility, setShapeVisibilityFlags, setTranslucent, toString
getArgbHbondType, getBondOrderFromFloat, getBondOrderFromString, getBondOrderNameFromOrder, getBondOrderNumberFromOrder, getCmlBondOrder, getCovalentBondOrder, getPartialBondDotted, getPartialBondOrder
float energy
private byte paletteID
private static final double QConst
public byte getPaletteId()
public void setPaletteID(byte paletteID)
setPaletteID
in class Bond
public static final int getEnergy(double distAH, double distCH, double distCD, double distAD)
distAH
- distCH
- distCD
- distAD
-