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itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage > Class Template Reference

#include <itkParzenWindowNormalizedMutualInformationImageToImageMetric.h>

Inheritance diagram for itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >:
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Collaboration diagram for itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >:
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Public Types

typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
 
typedef
Superclass::FixedImageLimiterOutputType 
FixedImageLimiterOutputType
 
typedef
Superclass::FixedImageLimiterType 
FixedImageLimiterType
 
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
 
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
 
typedef
Superclass::FixedImagePixelType 
FixedImagePixelType
 
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
 
typedef Superclass::FixedImageType FixedImageType
 
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
 
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
 
typedef
Superclass::GradientImagePointer 
GradientImagePointer
 
typedef
Superclass::GradientImageType 
GradientImageType
 
typedef
Superclass::GradientPixelType 
GradientPixelType
 
typedef
Superclass::ImageSampleContainerPointer 
ImageSampleContainerPointer
 
typedef
Superclass::ImageSampleContainerType 
ImageSampleContainerType
 
typedef
Superclass::ImageSamplerPointer 
ImageSamplerPointer
 
typedef
Superclass::ImageSamplerType 
ImageSamplerType
 
typedef Superclass::InputPointType InputPointType
 
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
 
typedef
Superclass::InterpolatorType 
InterpolatorType
 
typedef Superclass::MeasureType MeasureType
 
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
 
typedef
Superclass::MovingImageDerivativeScalesType 
MovingImageDerivativeScalesType
 
typedef
Superclass::MovingImageLimiterOutputType 
MovingImageLimiterOutputType
 
typedef
Superclass::MovingImageLimiterType 
MovingImageLimiterType
 
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
 
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
 
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
 
typedef
Superclass::MovingImageRegionType 
MovingImageRegionType
 
typedef Superclass::MovingImageType MovingImageType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::RealType RealType
 
typedef
ParzenWindowNormalizedMutualInformationImageToImageMetric 
Self
 
typedef
ParzenWindowHistogramImageToImageMetric
< TFixedImage, TMovingImage > 
Superclass
 
typedef
Superclass::TransformJacobianType 
TransformJacobianType
 
typedef
Superclass::TransformParametersType 
TransformParametersType
 
typedef
Superclass::TransformPointer 
TransformPointer
 
typedef Superclass::TransformType TransformType
 
- Public Types inherited from itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef
Superclass::DerivativeValueType 
DerivativeValueType
 
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
 
typedef
Superclass::FixedImageLimiterOutputType 
FixedImageLimiterOutputType
 
typedef
Superclass::FixedImageLimiterType 
FixedImageLimiterType
 
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
 
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
 
typedef
Superclass::FixedImagePixelType 
FixedImagePixelType
 
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
 
typedef Superclass::FixedImageType FixedImageType
 
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
 
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
 
typedef
Superclass::GradientImagePointer 
GradientImagePointer
 
typedef
Superclass::GradientImageType 
GradientImageType
 
typedef
Superclass::GradientPixelType 
GradientPixelType
 
typedef
Superclass::ImageSampleContainerPointer 
ImageSampleContainerPointer
 
typedef
Superclass::ImageSampleContainerType 
ImageSampleContainerType
 
typedef
Superclass::ImageSamplerPointer 
ImageSamplerPointer
 
typedef
Superclass::ImageSamplerType 
ImageSamplerType
 
typedef Superclass::InputPointType InputPointType
 
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
 
typedef
Superclass::InterpolatorType 
InterpolatorType
 
typedef Superclass::MeasureType MeasureType
 
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
 
typedef
Superclass::MovingImageDerivativeScalesType 
MovingImageDerivativeScalesType
 
typedef
Superclass::MovingImageLimiterOutputType 
MovingImageLimiterOutputType
 
typedef
Superclass::MovingImageLimiterType 
MovingImageLimiterType
 
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
 
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
 
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
 
typedef
Superclass::MovingImageRegionType 
MovingImageRegionType
 
typedef Superclass::MovingImageType MovingImageType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::RealType RealType
 
typedef
ParzenWindowHistogramImageToImageMetric 
Self
 
typedef
AdvancedImageToImageMetric
< TFixedImage, TMovingImage > 
Superclass
 
typedef
Superclass::TransformJacobianType 
TransformJacobianType
 
typedef
Superclass::TransformParametersType 
TransformParametersType
 
typedef
Superclass::TransformPointer 
TransformPointer
 
typedef Superclass::TransformType TransformType
 
- Public Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
typedef AdvancedTransform
< ScalarType,
FixedImageDimension,
MovingImageDimension > 
AdvancedTransformType
 
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef DerivativeType::ValueType DerivativeValueType
 
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
 
typedef
FixedImageLimiterType::OutputType 
FixedImageLimiterOutputType
 
typedef LimiterFunctionBase
< RealType,
FixedImageDimension > 
FixedImageLimiterType
 
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
 
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
 
typedef FixedImageType::PixelType FixedImagePixelType
 
typedef FixedImageType::Pointer FixedImagePointer
 
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
 
typedef Superclass::FixedImageType FixedImageType
 
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
 
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
 
typedef
Superclass::GradientImagePointer 
GradientImagePointer
 
typedef
Superclass::GradientImageType 
GradientImageType
 
typedef
Superclass::GradientPixelType 
GradientPixelType
 
typedef vnl_sparse_matrix
< HessianValueType
HessianType
 
typedef DerivativeType::ValueType HessianValueType
 
typedef
ImageSamplerType::OutputVectorContainerPointer 
ImageSampleContainerPointer
 
typedef
ImageSamplerType::OutputVectorContainerType 
ImageSampleContainerType
 
typedef ImageSamplerType::Pointer ImageSamplerPointer
 
typedef ImageSamplerBase
< FixedImageType
ImageSamplerType
 
typedef Superclass::InputPointType InputPointType
 
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
 
typedef
Superclass::InterpolatorType 
InterpolatorType
 
typedef Superclass::MeasureType MeasureType
 
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
 
typedef FixedArray< double,
itkGetStaticConstMacro(MovingImageDimension) > 
MovingImageDerivativeScalesType
 
typedef
MovingImageLimiterType::OutputType 
MovingImageLimiterOutputType
 
typedef LimiterFunctionBase
< RealType,
MovingImageDimension > 
MovingImageLimiterType
 
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
 
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
 
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
 
typedef MovingImageType::Pointer MovingImagePointer
 
typedef MovingImageType::RegionType MovingImageRegionType
 
typedef Superclass::MovingImageType MovingImageType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::RealType RealType
 
typedef TransformType::ScalarType ScalarType
 
typedef AdvancedImageToImageMetric Self
 
typedef ImageToImageMetric
< TFixedImage, TMovingImage > 
Superclass
 
typedef
Superclass::TransformJacobianType 
TransformJacobianType
 
typedef
Superclass::TransformParametersType 
TransformParametersType
 
typedef
Superclass::TransformPointer 
TransformPointer
 
typedef Superclass::TransformType TransformType
 

Public Member Functions

virtual const char * GetClassName () const
 
MeasureType GetValue (const ParametersType &parameters) const
 
void GetValueAndDerivative (const ParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
- Public Member Functions inherited from itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >
void GetDerivative (const ParametersType &parameters, DerivativeType &Derivative) const
 
virtual double GetFiniteDifferencePerturbation () const
 
virtual unsigned int GetFixedKernelBSplineOrder () const
 
virtual unsigned int GetMovingKernelBSplineOrder () const
 
virtual unsigned long GetNumberOfFixedHistogramBins ()
 
virtual unsigned long GetNumberOfMovingHistogramBins ()
 
virtual bool GetUseDerivative () const
 
virtual const boolGetUseExplicitPDFDerivatives ()
 
virtual bool GetUseFiniteDifferenceDerivative () const
 
void GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const
 
void Initialize (void) throw ( ExceptionObject )
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
virtual void SetFiniteDifferencePerturbation (double _arg)
 
virtual void SetFixedKernelBSplineOrder (unsigned int _arg)
 
virtual void SetMovingKernelBSplineOrder (unsigned int _arg)
 
virtual void SetNumberOfFixedHistogramBins (unsigned long _arg)
 
virtual void SetNumberOfMovingHistogramBins (unsigned long _arg)
 
virtual void SetUseDerivative (bool _arg)
 
virtual void SetUseExplicitPDFDerivatives (bool _arg)
 
virtual void SetUseFiniteDifferenceDerivative (bool _arg)
 
virtual void UseExplicitPDFDerivativesOff ()
 
virtual void UseExplicitPDFDerivativesOn ()
 
- Public Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
virtual const
FixedImageLimiterType
GetFixedImageLimiter ()
 
virtual double GetFixedLimitRangeRatio () const
 
virtual ImageSamplerTypeGetImageSampler (void) const
 
virtual const
MovingImageDerivativeScalesType
GetMovingImageDerivativeScales ()
 
virtual const
MovingImageLimiterType
GetMovingImageLimiter ()
 
virtual double GetMovingLimitRangeRatio () const
 
virtual double GetRequiredRatioOfValidSamples () const
 
virtual void GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const
 
const AdvancedTransformTypeGetTransform (void) const
 
virtual bool GetUseFixedImageLimiter () const
 
virtual bool GetUseImageSampler () const
 
virtual bool GetUseMovingImageDerivativeScales () const
 
virtual bool GetUseMovingImageLimiter () const
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension)
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)
 
virtual void SetFixedImageLimiter (FixedImageLimiterType *_arg)
 
virtual void SetFixedLimitRangeRatio (double _arg)
 
virtual void SetImageSampler (ImageSamplerType *_arg)
 
virtual void SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)
 
virtual void SetMovingImageLimiter (MovingImageLimiterType *_arg)
 
virtual void SetMovingLimitRangeRatio (double _arg)
 
virtual void SetRequiredRatioOfValidSamples (double _arg)
 
virtual void SetTransform (AdvancedTransformType *arg)
 
virtual void SetUseMovingImageDerivativeScales (bool _arg)
 

Static Public Member Functions

static Pointer New ()
 

Protected Types

typedef
Superclass::BSplineInterpolatorType 
BSplineInterpolatorType
 
typedef
Superclass::CentralDifferenceGradientFilterType 
CentralDifferenceGradientFilterType
 
typedef
Superclass::FixedImageIndexType 
FixedImageIndexType
 
typedef
Superclass::FixedImageIndexValueType 
FixedImageIndexValueType
 
typedef
Superclass::FixedImagePointType 
FixedImagePointType
 
typedef
Superclass::IncrementalMarginalPDFType 
IncrementalMarginalPDFType
 
typedef
Superclass::JointPDFDerivativesIndexType 
JointPDFDerivativesIndexType
 
typedef
Superclass::JointPDFDerivativesRegionType 
JointPDFDerivativesRegionType
 
typedef
Superclass::JointPDFDerivativesSizeType 
JointPDFDerivativesSizeType
 
typedef
Superclass::JointPDFDerivativesType 
JointPDFDerivativesType
 
typedef
Superclass::JointPDFIndexType 
JointPDFIndexType
 
typedef
Superclass::JointPDFRegionType 
JointPDFRegionType
 
typedef
Superclass::JointPDFSizeType 
JointPDFSizeType
 
typedef Superclass::JointPDFType JointPDFType
 
typedef
Superclass::KernelFunctionType 
KernelFunctionType
 
typedef Superclass::MarginalPDFType MarginalPDFType
 
typedef
Superclass::MovingImageContinuousIndexType 
MovingImageContinuousIndexType
 
typedef
Superclass::MovingImageDerivativeType 
MovingImageDerivativeType
 
typedef
Superclass::MovingImageIndexType 
MovingImageIndexType
 
typedef
Superclass::MovingImagePointType 
MovingImagePointType
 
typedef
Superclass::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
 
typedef
Superclass::ParzenValueContainerType 
ParzenValueContainerType
 
typedef Superclass::PDFValueType PDFValueType
 
- Protected Types inherited from itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >
typedef
Superclass::BSplineInterpolatorType 
BSplineInterpolatorType
 
typedef
Superclass::CentralDifferenceGradientFilterType 
CentralDifferenceGradientFilterType
 
typedef
Superclass::FixedImageIndexType 
FixedImageIndexType
 
typedef
Superclass::FixedImageIndexValueType 
FixedImageIndexValueType
 
typedef
Superclass::FixedImagePointType 
FixedImagePointType
 
typedef
IncrementalMarginalPDFType::IndexType 
IncrementalMarginalPDFIndexType
 
typedef
IncrementalMarginalPDFType::RegionType 
IncrementalMarginalPDFRegionType
 
typedef
IncrementalMarginalPDFType::SizeType 
IncrementalMarginalPDFSizeType
 
typedef Image< PDFValueType, 2 > IncrementalMarginalPDFType
 
typedef
JointPDFDerivativesType::IndexType 
JointPDFDerivativesIndexType
 
typedef
JointPDFDerivativesType::RegionType 
JointPDFDerivativesRegionType
 
typedef
JointPDFDerivativesType::SizeType 
JointPDFDerivativesSizeType
 
typedef Image< PDFValueType, 3 > JointPDFDerivativesType
 
typedef JointPDFType::IndexType JointPDFIndexType
 
typedef JointPDFType::RegionType JointPDFRegionType
 
typedef JointPDFType::SizeType JointPDFSizeType
 
typedef Image< PDFValueType, 2 > JointPDFType
 
typedef KernelFunctionBase
< double
KernelFunctionType
 
typedef Array< PDFValueTypeMarginalPDFType
 
typedef
Superclass::MovingImageContinuousIndexType 
MovingImageContinuousIndexType
 
typedef
Superclass::MovingImageDerivativeType 
MovingImageDerivativeType
 
typedef
Superclass::MovingImageIndexType 
MovingImageIndexType
 
typedef
Superclass::MovingImagePointType 
MovingImagePointType
 
typedef
Superclass::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
 
typedef
FixedImageType::OffsetValueType 
OffsetValueType
 
typedef Array< doubleParzenValueContainerType
 
typedef float PDFValueType
 
- Protected Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
typedef
BSplineInterpolateImageFunction
< MovingImageType,
CoordinateRepresentationType,
float
BSplineInterpolatorFloatType
 
typedef
BSplineInterpolateImageFunction
< MovingImageType,
CoordinateRepresentationType,
double
BSplineInterpolatorType
 
typedef GradientImageFilter
< MovingImageType, RealType,
RealType
CentralDifferenceGradientFilterType
 
typedef FixedImageType::IndexType FixedImageIndexType
 
typedef
FixedImageIndexType::IndexValueType 
FixedImageIndexValueType
 
typedef
TransformType::InputPointType 
FixedImagePointType
 
typedef
InterpolatorType::ContinuousIndexType 
MovingImageContinuousIndexType
 
typedef
BSplineInterpolatorType::CovariantVectorType 
MovingImageDerivativeType
 
typedef MovingImageType::IndexType MovingImageIndexType
 
typedef
TransformType::OutputPointType 
MovingImagePointType
 
typedef
AdvancedTransformType::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
 
typedef
ReducedDimensionBSplineInterpolateImageFunction
< MovingImageType,
CoordinateRepresentationType,
double
ReducedBSplineInterpolatorType
 

Protected Member Functions

virtual void ComputeLogMarginalPDF (MarginalPDFType &pdf) const
 
virtual MeasureType ComputeNormalizedMutualInformation (MeasureType &jointEntropy) const
 
 ParzenWindowNormalizedMutualInformationImageToImageMetric ()
 
void PrintSelf (std::ostream &os, Indent indent) const
 
virtual ~ParzenWindowNormalizedMutualInformationImageToImageMetric ()
 
- Protected Member Functions inherited from itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >
virtual void ComputeIncrementalMarginalPDFs (const JointPDFDerivativesType *incrementalPDF, IncrementalMarginalPDFType *fixedIncrementalMarginalPDF, IncrementalMarginalPDFType *movingIncrementalMarginalPDF) const
 
virtual void ComputeMarginalPDF (const JointPDFType *jointPDF, MarginalPDFType &marginalPDF, unsigned int direction) const
 
virtual void ComputePDFs (const ParametersType &parameters) const
 
virtual void ComputePDFsAndIncrementalPDFs (const ParametersType &parameters) const
 
virtual void ComputePDFsAndPDFDerivatives (const ParametersType &parameters) const
 
void EvaluateParzenValues (double parzenWindowTerm, OffsetValueType parzenWindowIndex, const KernelFunctionType *kernel, ParzenValueContainerType &parzenValues) const
 
void EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const
 
virtual void GetValueAndAnalyticDerivative (const ParametersType &, MeasureType &, DerivativeType &) const
 
virtual void GetValueAndFiniteDifferenceDerivative (const ParametersType &, MeasureType &, DerivativeType &) const
 
virtual void InitializeHistograms (void)
 
virtual void InitializeKernels (void)
 
virtual void NormalizeJointPDF (JointPDFType *pdf, double factor) const
 
virtual void NormalizeJointPDFDerivatives (JointPDFDerivativesType *pdf, double factor) const
 
 ParzenWindowHistogramImageToImageMetric ()
 
void PrintSelf (std::ostream &os, Indent indent) const
 
virtual void UpdateJointPDFAndDerivatives (RealType fixedImageValue, RealType movingImageValue, const DerivativeType *imageJacobian, const NonZeroJacobianIndicesType *nzji) const
 
virtual void UpdateJointPDFAndIncrementalPDFs (RealType fixedImageValue, RealType movingImageValue, RealType movingMaskValue, const DerivativeType &movingImageValuesRight, const DerivativeType &movingImageValuesLeft, const DerivativeType &movingMaskValuesRight, const DerivativeType &movingMaskValuesLeft, const NonZeroJacobianIndicesType &nzji) const
 
void UpdateJointPDFDerivatives (const JointPDFIndexType &pdfIndex, double factor, const DerivativeType &imageJacobian, const NonZeroJacobianIndicesType &nzji) const
 
virtual ~ParzenWindowHistogramImageToImageMetric ()
 
- Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
 AdvancedImageToImageMetric ()
 
virtual void CheckForAdvancedTransform (void)
 
virtual void CheckForBSplineInterpolator (void)
 
virtual void CheckNumberOfSamples (unsigned long wanted, unsigned long found) const
 
virtual void ComputeFixedImageExtrema (const FixedImageType *image, const FixedImageRegionType &region)
 
virtual void ComputeMovingImageExtrema (const MovingImageType *image, const MovingImageRegionType &region)
 
virtual bool EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const
 
virtual bool EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
 
virtual void InitializeImageSampler (void) throw ( ExceptionObject )
 
virtual void InitializeLimiters (void)
 
virtual bool IsInsideMovingMask (const MovingImagePointType &point) const
 
void PrintSelf (std::ostream &os, Indent indent) const
 
virtual void SetUseFixedImageLimiter (bool _arg)
 
virtual void SetUseImageSampler (bool _arg)
 
virtual void SetUseMovingImageLimiter (bool _arg)
 
virtual bool TransformPoint (const FixedImagePointType &fixedImagePoint, MovingImagePointType &mappedPoint) const
 
virtual ~AdvancedImageToImageMetric ()
 

Private Member Functions

void operator= (const Self &)
 
 ParzenWindowNormalizedMutualInformationImageToImageMetric (const Self &)
 

Additional Inherited Members

- Protected Attributes inherited from itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >
double m_Alpha
 
KernelFunctionType::Pointer m_DerivativeMovingKernel
 
double m_FixedImageBinSize
 
MarginalPDFType m_FixedImageMarginalPDF
 
double m_FixedImageNormalizedMin
 
IncrementalMarginalPDFType::Pointer m_FixedIncrementalMarginalPDFLeft
 
IncrementalMarginalPDFType::Pointer m_FixedIncrementalMarginalPDFRight
 
KernelFunctionType::Pointer m_FixedKernel
 
double m_FixedParzenTermToIndexOffset
 
JointPDFDerivativesType::Pointer m_IncrementalJointPDFLeft
 
JointPDFDerivativesType::Pointer m_IncrementalJointPDFRight
 
JointPDFType::Pointer m_JointPDF
 
JointPDFDerivativesType::Pointer m_JointPDFDerivatives
 
JointPDFRegionType m_JointPDFWindow
 
double m_MovingImageBinSize
 
MarginalPDFType m_MovingImageMarginalPDF
 
double m_MovingImageNormalizedMin
 
IncrementalMarginalPDFType::Pointer m_MovingIncrementalMarginalPDFLeft
 
IncrementalMarginalPDFType::Pointer m_MovingIncrementalMarginalPDFRight
 
KernelFunctionType::Pointer m_MovingKernel
 
double m_MovingParzenTermToIndexOffset
 
DerivativeType m_PerturbedAlphaLeft
 
DerivativeType m_PerturbedAlphaRight
 
- Protected Attributes inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
AdvancedTransformType::Pointer m_AdvancedTransform
 
BSplineInterpolatorType::Pointer m_BSplineInterpolator
 
BSplineInterpolatorFloatType::Pointer m_BSplineInterpolatorFloat
 
CentralDifferenceGradientFilterType::Pointer m_CentralDifferenceGradientFilter
 
FixedImageLimiterType::Pointer m_FixedImageLimiter
 
FixedImageLimiterOutputType m_FixedImageMaxLimit
 
FixedImageLimiterOutputType m_FixedImageMinLimit
 
FixedImagePixelType m_FixedImageTrueMax
 
FixedImagePixelType m_FixedImageTrueMin
 
ImageSamplerPointer m_ImageSampler
 
bool m_InterpolatorIsBSpline
 
bool m_InterpolatorIsBSplineFloat
 
bool m_InterpolatorIsReducedBSpline
 
MovingImageLimiterType::Pointer m_MovingImageLimiter
 
MovingImageLimiterOutputType m_MovingImageMaxLimit
 
MovingImageLimiterOutputType m_MovingImageMinLimit
 
MovingImagePixelType m_MovingImageTrueMax
 
MovingImagePixelType m_MovingImageTrueMin
 
ReducedBSplineInterpolatorType::Pointer m_ReducedBSplineInterpolator
 
bool m_TransformIsAdvanced
 

Detailed Description

template<class TFixedImage, class TMovingImage>
class itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >

Computes the normalized mutual information between two images to be registered using a method based on Thevenaz&Unser [3].

ParzenWindowNormalizedMutualInformationImageToImageMetric computes the normalized mutual information between a fixed and moving image to be registered. The calculations are based on the method of Mattes et al [1,2] and Thevenaz&Unser [3], where the probability density distribution are estimated using Parzen histograms. The expression for the derivative is derived following [3].

Construction of the PDFs is implemented in the superclass ParzenWindowHistogramImageToImageMetric.

This implementation of the NormalizedMutualInformation is based on the AdvancedImageToImageMetric, which means that:

Notes:

  1. This class returns the negative normalized mutual information value.
  2. This class in not thread safe due the private data structures used to the store the marginal and joint pdfs.

References:
[1] "Nonrigid multimodality image registration"
D. Mattes, D. R. Haynor, H. Vesselle, T. Lewellen and W. Eubank
Medical Imaging 2001: Image Processing, 2001, pp. 1609-1620.
[2] "PET-CT Image Registration in the Chest Using Free-form Deformations"
D. Mattes, D. R. Haynor, H. Vesselle, T. Lewellen and W. Eubank
IEEE Transactions in Medical Imaging. To Appear.
[3] "Optimization of Mutual Information for MultiResolution Image Registration"
P. Thevenaz and M. Unser
IEEE Transactions in Image Processing, 9(12) December 2000.

See Also
ParzenWindowHistogramImageToImageMetric

Definition at line 68 of file itkParzenWindowNormalizedMutualInformationImageToImageMetric.h.

Member Typedef Documentation

template<class TFixedImage, class TMovingImage>
typedef Superclass::BSplineInterpolatorType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::BSplineInterpolatorType
protected
template<class TFixedImage, class TMovingImage>
typedef Superclass::CentralDifferenceGradientFilterType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::CentralDifferenceGradientFilterType
protected
template<class TFixedImage, class TMovingImage>
typedef SmartPointer<const Self> itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ConstPointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::CoordinateRepresentationType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::CoordinateRepresentationType

Typedefs from the superclass.

Definition at line 86 of file itkParzenWindowNormalizedMutualInformationImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>
typedef Superclass::DerivativeType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::DerivativeType
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImageConstPointer itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageConstPointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImageIndexType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexType
protected

Protected Typedefs Typedefs inherited from superclass

Definition at line 163 of file itkParzenWindowNormalizedMutualInformationImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImageIndexValueType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexValueType
protected
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImageLimiterOutputType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageLimiterOutputType
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImageLimiterType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageLimiterType
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImageMaskPointer itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskPointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImageMaskType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskType
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImagePixelType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePixelType
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImagePointType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePointType
protected
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImageRegionType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageRegionType
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImageType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageType
template<class TFixedImage, class TMovingImage>
typedef Superclass::GradientImageFilterPointer itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GradientImageFilterPointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::GradientImageFilterType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GradientImageFilterType
template<class TFixedImage, class TMovingImage>
typedef Superclass::GradientImagePointer itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GradientImagePointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::GradientImageType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GradientImageType
template<class TFixedImage, class TMovingImage>
typedef Superclass::GradientPixelType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GradientPixelType
template<class TFixedImage, class TMovingImage>
typedef Superclass::ImageSampleContainerPointer itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ImageSampleContainerPointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::ImageSampleContainerType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ImageSampleContainerType
template<class TFixedImage, class TMovingImage>
typedef Superclass::ImageSamplerPointer itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ImageSamplerPointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::ImageSamplerType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ImageSamplerType
template<class TFixedImage, class TMovingImage>
typedef Superclass::IncrementalMarginalPDFType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::IncrementalMarginalPDFType
protected
template<class TFixedImage, class TMovingImage>
typedef Superclass::InputPointType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::InputPointType
template<class TFixedImage, class TMovingImage>
typedef Superclass::InterpolatorPointer itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorPointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::InterpolatorType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorType
template<class TFixedImage, class TMovingImage>
typedef Superclass::JointPDFDerivativesIndexType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFDerivativesIndexType
protected
template<class TFixedImage, class TMovingImage>
typedef Superclass::JointPDFDerivativesRegionType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFDerivativesRegionType
protected
template<class TFixedImage, class TMovingImage>
typedef Superclass::JointPDFDerivativesSizeType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFDerivativesSizeType
protected
template<class TFixedImage, class TMovingImage>
typedef Superclass::JointPDFDerivativesType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFDerivativesType
protected
template<class TFixedImage, class TMovingImage>
typedef Superclass::JointPDFIndexType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFIndexType
protected
template<class TFixedImage, class TMovingImage>
typedef Superclass::JointPDFRegionType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFRegionType
protected
template<class TFixedImage, class TMovingImage>
typedef Superclass::JointPDFSizeType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFSizeType
protected
template<class TFixedImage, class TMovingImage>
typedef Superclass::JointPDFType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFType
protected
template<class TFixedImage, class TMovingImage>
typedef Superclass::KernelFunctionType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::KernelFunctionType
protected
template<class TFixedImage, class TMovingImage>
typedef Superclass::MarginalPDFType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MarginalPDFType
protected
template<class TFixedImage, class TMovingImage>
typedef Superclass::MeasureType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MeasureType
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageConstPointer itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageConstPointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageContinuousIndexType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageContinuousIndexType
protected
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageDerivativeScalesType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageDerivativeScalesType
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageDerivativeType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageDerivativeType
protected
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageIndexType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageIndexType
protected
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageLimiterOutputType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageLimiterOutputType
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageLimiterType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageLimiterType
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageMaskPointer itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskPointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageMaskType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskType
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImagePixelType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePixelType
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImagePointType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePointType
protected
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageRegionType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageRegionType
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageType
template<class TFixedImage, class TMovingImage>
typedef Superclass::NonZeroJacobianIndicesType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::NonZeroJacobianIndicesType
protected
template<class TFixedImage, class TMovingImage>
typedef Superclass::OutputPointType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::OutputPointType
template<class TFixedImage, class TMovingImage>
typedef Superclass::ParametersType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ParametersType
template<class TFixedImage, class TMovingImage>
typedef Superclass::ParzenValueContainerType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ParzenValueContainerType
protected
template<class TFixedImage, class TMovingImage>
typedef Superclass::PDFValueType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::PDFValueType
protected
template<class TFixedImage, class TMovingImage>
typedef SmartPointer<Self> itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Pointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::RealType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::RealType
template<class TFixedImage, class TMovingImage>
typedef ParzenWindowNormalizedMutualInformationImageToImageMetric itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Self

Standard class typedefs.

Definition at line 74 of file itkParzenWindowNormalizedMutualInformationImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>
typedef ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage > itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Superclass
template<class TFixedImage, class TMovingImage>
typedef Superclass::TransformJacobianType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianType
template<class TFixedImage, class TMovingImage>
typedef Superclass::TransformParametersType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformParametersType
template<class TFixedImage, class TMovingImage>
typedef Superclass::TransformPointer itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformPointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::TransformType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformType

Constructor & Destructor Documentation

template<class TFixedImage, class TMovingImage>
itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ParzenWindowNormalizedMutualInformationImageToImageMetric ( )
inlineprotected

The constructor.

Definition at line 152 of file itkParzenWindowNormalizedMutualInformationImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>
virtual itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::~ParzenWindowNormalizedMutualInformationImageToImageMetric ( )
inlineprotectedvirtual

The destructor.

Definition at line 155 of file itkParzenWindowNormalizedMutualInformationImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>
itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ParzenWindowNormalizedMutualInformationImageToImageMetric ( const Self )
private

The private constructor.

Member Function Documentation

template<class TFixedImage, class TMovingImage>
virtual void itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ComputeLogMarginalPDF ( MarginalPDFType pdf) const
protectedvirtual

Replace the marginal probabilities by log(probabilities) Changes the input pdf since they are not needed anymore!

template<class TFixedImage, class TMovingImage>
virtual MeasureType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ComputeNormalizedMutualInformation ( MeasureType jointEntropy) const
protectedvirtual

Compute the normalized mutual information and the jointEntropy NMI = (Ef + Em) / Ej Ef = fixed marginal entropy = - sum_k sum_i p(i,k) log pf(k) Em = moving marginal entropy = - sum_k sum_i p(i,k) log pm(i) Ej = joint entropy = - sum_k sum_i p(i,k) log p(i,k)

template<class TFixedImage, class TMovingImage>
virtual const char* itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >.

Reimplemented in elastix::NormalizedMutualInformationMetric< TElastix >.

template<class TFixedImage, class TMovingImage>
MeasureType itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValue ( const ParametersType parameters) const

Get the value: the negative normalized mutual information.

template<class TFixedImage, class TMovingImage>
void itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivative ( const ParametersType parameters,
MeasureType Value,
DerivativeType Derivative 
) const

Get the value and derivatives for single valued optimizers.

template<class TFixedImage, class TMovingImage>
itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro ( FixedImageDimension  ,
unsigned  int,
FixedImageType::ImageDimension   
)

The fixed image dimension.

template<class TFixedImage, class TMovingImage>
itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro ( MovingImageDimension  ,
unsigned  int,
MovingImageType::ImageDimension   
)

The moving image dimension.

template<class TFixedImage, class TMovingImage>
static Pointer itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::New ( )
static

Method for creation through the object factory.

template<class TFixedImage, class TMovingImage>
void itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::operator= ( const Self )
private

The private copy constructor.

template<class TFixedImage, class TMovingImage>
void itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protected

Print Self.



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