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elastix::NormalizedMutualInformationMetric< TElastix > Class Template Reference

#include <elxNormalizedMutualInformationMetric.h>

Inheritance diagram for elastix::NormalizedMutualInformationMetric< TElastix >:
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Collaboration diagram for elastix::NormalizedMutualInformationMetric< TElastix >:
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Public Types

typedef
Superclass2::ConfigurationPointer 
ConfigurationPointer
 
typedef
Superclass2::ConfigurationType 
ConfigurationType
 
typedef itk::SmartPointer
< const Self
ConstPointer
 
typedef
Superclass1::CoordinateRepresentationType 
CoordinateRepresentationType
 
typedef Superclass1::DerivativeType DerivativeType
 
typedef Superclass2::ElastixPointer ElastixPointer
 
typedef Superclass2::ElastixType ElastixType
 
typedef
Superclass1::FixedImageConstPointer 
FixedImageConstPointer
 
typedef
Superclass1::FixedImageLimiterOutputType 
FixedImageLimiterOutputType
 
typedef
Superclass1::FixedImageLimiterType 
FixedImageLimiterType
 
typedef
Superclass1::FixedImageMaskPointer 
FixedImageMaskPointer
 
typedef
Superclass1::FixedImageMaskType 
FixedImageMaskType
 
typedef
Superclass1::FixedImagePixelType 
FixedImagePixelType
 
typedef
Superclass1::FixedImageRegionType 
FixedImageRegionType
 
typedef Superclass1::FixedImageType FixedImageType
 
typedef
Superclass1::GradientImageFilterPointer 
GradientImageFilterPointer
 
typedef
Superclass1::GradientImageFilterType 
GradientImageFilterType
 
typedef
Superclass1::GradientImagePointer 
GradientImagePointer
 
typedef
Superclass1::GradientImageType 
GradientImageType
 
typedef
Superclass1::GradientPixelType 
GradientPixelType
 
typedef
Superclass1::ImageSampleContainerPointer 
ImageSampleContainerPointer
 
typedef
Superclass1::ImageSampleContainerType 
ImageSampleContainerType
 
typedef
Superclass1::ImageSamplerPointer 
ImageSamplerPointer
 
typedef
Superclass1::ImageSamplerType 
ImageSamplerType
 
typedef Superclass1::InputPointType InputPointType
 
typedef
Superclass1::InterpolatorPointer 
InterpolatorPointer
 
typedef
Superclass1::InterpolatorType 
InterpolatorType
 
typedef Superclass2::ITKBaseType ITKBaseType
 
typedef Superclass1::MeasureType MeasureType
 
typedef
Superclass1::MovingImageConstPointer 
MovingImageConstPointer
 
typedef
Superclass1::MovingImageDerivativeScalesType 
MovingImageDerivativeScalesType
 
typedef
Superclass1::MovingImageLimiterOutputType 
MovingImageLimiterOutputType
 
typedef
Superclass1::MovingImageLimiterType 
MovingImageLimiterType
 
typedef
Superclass1::MovingImageMaskPointer 
MovingImageMaskPointer
 
typedef
Superclass1::MovingImageMaskType 
MovingImageMaskType
 
typedef
Superclass1::MovingImagePixelType 
MovingImagePixelType
 
typedef
Superclass1::MovingImageRegionType 
MovingImageRegionType
 
typedef
Superclass1::MovingImageType 
MovingImageType
 
typedef
Superclass1::OutputPointType 
OutputPointType
 
typedef Superclass1::ParametersType ParametersType
 
typedef itk::SmartPointer< SelfPointer
 
typedef Superclass1::RealType RealType
 
typedef
Superclass2::RegistrationPointer 
RegistrationPointer
 
typedef
Superclass2::RegistrationType 
RegistrationType
 
typedef
NormalizedMutualInformationMetric 
Self
 
typedef
itk::ParzenWindowNormalizedMutualInformationImageToImageMetric
< typename MetricBase
< TElastix >::FixedImageType,
typename MetricBase< TElastix >
::MovingImageType
Superclass1
 
typedef MetricBase< TElastix > Superclass2
 
typedef TimerType::Pointer TimerPointer
 
typedef tmr::Timer TimerType
 
typedef
Superclass1::TransformJacobianType 
TransformJacobianType
 
typedef
Superclass1::TransformParametersType 
TransformParametersType
 
typedef
Superclass1::TransformPointer 
TransformPointer
 
typedef Superclass1::TransformType TransformType
 
- Public Types inherited from itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
 
typedef
Superclass::FixedImageLimiterOutputType 
FixedImageLimiterOutputType
 
typedef
Superclass::FixedImageLimiterType 
FixedImageLimiterType
 
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
 
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
 
typedef
Superclass::FixedImagePixelType 
FixedImagePixelType
 
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
 
typedef Superclass::FixedImageType FixedImageType
 
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
 
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
 
typedef
Superclass::GradientImagePointer 
GradientImagePointer
 
typedef
Superclass::GradientImageType 
GradientImageType
 
typedef
Superclass::GradientPixelType 
GradientPixelType
 
typedef
Superclass::ImageSampleContainerPointer 
ImageSampleContainerPointer
 
typedef
Superclass::ImageSampleContainerType 
ImageSampleContainerType
 
typedef
Superclass::ImageSamplerPointer 
ImageSamplerPointer
 
typedef
Superclass::ImageSamplerType 
ImageSamplerType
 
typedef Superclass::InputPointType InputPointType
 
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
 
typedef
Superclass::InterpolatorType 
InterpolatorType
 
typedef Superclass::MeasureType MeasureType
 
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
 
typedef
Superclass::MovingImageDerivativeScalesType 
MovingImageDerivativeScalesType
 
typedef
Superclass::MovingImageLimiterOutputType 
MovingImageLimiterOutputType
 
typedef
Superclass::MovingImageLimiterType 
MovingImageLimiterType
 
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
 
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
 
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
 
typedef
Superclass::MovingImageRegionType 
MovingImageRegionType
 
typedef Superclass::MovingImageType MovingImageType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::RealType RealType
 
typedef
ParzenWindowNormalizedMutualInformationImageToImageMetric 
Self
 
typedef
ParzenWindowHistogramImageToImageMetric
< MetricBase< TElastix >
::FixedImageType, MetricBase
< TElastix >::MovingImageType
Superclass
 
typedef
Superclass::TransformJacobianType 
TransformJacobianType
 
typedef
Superclass::TransformParametersType 
TransformParametersType
 
typedef
Superclass::TransformPointer 
TransformPointer
 
typedef Superclass::TransformType TransformType
 
- Public Types inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef
Superclass::DerivativeValueType 
DerivativeValueType
 
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
 
typedef
Superclass::FixedImageLimiterOutputType 
FixedImageLimiterOutputType
 
typedef
Superclass::FixedImageLimiterType 
FixedImageLimiterType
 
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
 
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
 
typedef
Superclass::FixedImagePixelType 
FixedImagePixelType
 
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
 
typedef Superclass::FixedImageType FixedImageType
 
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
 
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
 
typedef
Superclass::GradientImagePointer 
GradientImagePointer
 
typedef
Superclass::GradientImageType 
GradientImageType
 
typedef
Superclass::GradientPixelType 
GradientPixelType
 
typedef
Superclass::ImageSampleContainerPointer 
ImageSampleContainerPointer
 
typedef
Superclass::ImageSampleContainerType 
ImageSampleContainerType
 
typedef
Superclass::ImageSamplerPointer 
ImageSamplerPointer
 
typedef
Superclass::ImageSamplerType 
ImageSamplerType
 
typedef Superclass::InputPointType InputPointType
 
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
 
typedef
Superclass::InterpolatorType 
InterpolatorType
 
typedef Superclass::MeasureType MeasureType
 
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
 
typedef
Superclass::MovingImageDerivativeScalesType 
MovingImageDerivativeScalesType
 
typedef
Superclass::MovingImageLimiterOutputType 
MovingImageLimiterOutputType
 
typedef
Superclass::MovingImageLimiterType 
MovingImageLimiterType
 
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
 
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
 
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
 
typedef
Superclass::MovingImageRegionType 
MovingImageRegionType
 
typedef Superclass::MovingImageType MovingImageType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::RealType RealType
 
typedef
ParzenWindowHistogramImageToImageMetric 
Self
 
typedef
AdvancedImageToImageMetric
< MetricBase< TElastix >
::FixedImageType, MetricBase
< TElastix >::MovingImageType
Superclass
 
typedef
Superclass::TransformJacobianType 
TransformJacobianType
 
typedef
Superclass::TransformParametersType 
TransformParametersType
 
typedef
Superclass::TransformPointer 
TransformPointer
 
typedef Superclass::TransformType TransformType
 
- Public Types inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef AdvancedTransform
< ScalarType,
FixedImageDimension,
MovingImageDimension > 
AdvancedTransformType
 
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef DerivativeType::ValueType DerivativeValueType
 
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
 
typedef
FixedImageLimiterType::OutputType 
FixedImageLimiterOutputType
 
typedef LimiterFunctionBase
< RealType,
FixedImageDimension > 
FixedImageLimiterType
 
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
 
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
 
typedef FixedImageType::PixelType FixedImagePixelType
 
typedef FixedImageType::Pointer FixedImagePointer
 
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
 
typedef Superclass::FixedImageType FixedImageType
 
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
 
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
 
typedef
Superclass::GradientImagePointer 
GradientImagePointer
 
typedef
Superclass::GradientImageType 
GradientImageType
 
typedef
Superclass::GradientPixelType 
GradientPixelType
 
typedef vnl_sparse_matrix
< HessianValueType
HessianType
 
typedef DerivativeType::ValueType HessianValueType
 
typedef
ImageSamplerType::OutputVectorContainerPointer 
ImageSampleContainerPointer
 
typedef
ImageSamplerType::OutputVectorContainerType 
ImageSampleContainerType
 
typedef ImageSamplerType::Pointer ImageSamplerPointer
 
typedef ImageSamplerBase
< FixedImageType
ImageSamplerType
 
typedef Superclass::InputPointType InputPointType
 
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
 
typedef
Superclass::InterpolatorType 
InterpolatorType
 
typedef Superclass::MeasureType MeasureType
 
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
 
typedef FixedArray< double,
itkGetStaticConstMacro(MovingImageDimension) > 
MovingImageDerivativeScalesType
 
typedef
MovingImageLimiterType::OutputType 
MovingImageLimiterOutputType
 
typedef LimiterFunctionBase
< RealType,
MovingImageDimension > 
MovingImageLimiterType
 
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
 
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
 
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
 
typedef MovingImageType::Pointer MovingImagePointer
 
typedef MovingImageType::RegionType MovingImageRegionType
 
typedef Superclass::MovingImageType MovingImageType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::RealType RealType
 
typedef TransformType::ScalarType ScalarType
 
typedef AdvancedImageToImageMetric Self
 
typedef ImageToImageMetric
< MetricBase< TElastix >
::FixedImageType, MetricBase
< TElastix >::MovingImageType
Superclass
 
typedef
Superclass::TransformJacobianType 
TransformJacobianType
 
typedef
Superclass::TransformParametersType 
TransformParametersType
 
typedef
Superclass::TransformPointer 
TransformPointer
 
typedef Superclass::TransformType TransformType
 
- Public Types inherited from elastix::MetricBase< TElastix >
typedef
itk::AdvancedImageToImageMetric
< FixedImageType,
MovingImageType
AdvancedMetricType
 
typedef
Superclass::ConfigurationPointer 
ConfigurationPointer
 
typedef
Superclass::ConfigurationType 
ConfigurationType
 
typedef
ITKBaseType::ParametersValueType 
CoordinateRepresentationType
 
typedef Superclass::ElastixPointer ElastixPointer
 
typedef Superclass::ElastixType ElastixType
 
typedef ElastixType::FixedImageType FixedImageType
 
typedef itk::PointSet
< CoordinateRepresentationType,
FixedImageDimension,
itk::DefaultStaticMeshTraits
< CoordinateRepresentationType,
FixedImageDimension,
FixedImageDimension,
CoordinateRepresentationType,
CoordinateRepresentationType,
CoordinateRepresentationType > > 
FixedPointSetType
 
typedef FixedImageType::PointType FixedPointType
 
typedef FixedPointType::ValueType FixedPointValueType
 
typedef
AdvancedMetricType::ImageSamplerType 
ImageSamplerBaseType
 
typedef
itk::SingleValuedCostFunction 
ITKBaseType
 
typedef ITKBaseType::MeasureType MeasureType
 
typedef
ElastixType::MovingImageType 
MovingImageType
 
typedef itk::PointSet
< CoordinateRepresentationType,
MovingImageDimension,
itk::DefaultStaticMeshTraits
< CoordinateRepresentationType,
MovingImageDimension,
MovingImageDimension,
CoordinateRepresentationType,
CoordinateRepresentationType,
CoordinateRepresentationType > > 
MovingPointSetType
 
typedef MovingImageType::PointType MovingPointType
 
typedef MovingPointType::ValueType MovingPointValueType
 
typedef
Superclass::RegistrationPointer 
RegistrationPointer
 
typedef
Superclass::RegistrationType 
RegistrationType
 
typedef MetricBase Self
 
typedef BaseComponentSE< TElastix > Superclass
 
- Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef
ElastixType::ConfigurationPointer 
ConfigurationPointer
 
typedef
ElastixType::ConfigurationType 
ConfigurationType
 
typedef ElastixType::Pointer ElastixPointer
 
typedef TElastix ElastixType
 
typedef RegistrationTypeRegistrationPointer
 
typedef
ElastixType::RegistrationBaseType 
RegistrationType
 
typedef BaseComponentSE Self
 
typedef BaseComponent Superclass
 

Public Member Functions

virtual void BeforeEachResolution (void)
 
 elxClassNameMacro ("NormalizedMutualInformation")
 
virtual const char * GetClassName () const
 
virtual void Initialize (void) throw (itk::ExceptionObject)
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
- Public Member Functions inherited from itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
MeasureType GetValue (const ParametersType &parameters) const
 
void GetValueAndDerivative (const ParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
- Public Member Functions inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
void GetDerivative (const ParametersType &parameters, DerivativeType &Derivative) const
 
virtual double GetFiniteDifferencePerturbation () const
 
virtual unsigned int GetFixedKernelBSplineOrder () const
 
virtual unsigned int GetMovingKernelBSplineOrder () const
 
virtual unsigned long GetNumberOfFixedHistogramBins ()
 
virtual unsigned long GetNumberOfMovingHistogramBins ()
 
virtual bool GetUseDerivative () const
 
virtual const boolGetUseExplicitPDFDerivatives ()
 
virtual bool GetUseFiniteDifferenceDerivative () const
 
void GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const
 
void Initialize (void) throw ( ExceptionObject )
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
virtual void SetFiniteDifferencePerturbation (double _arg)
 
virtual void SetFixedKernelBSplineOrder (unsigned int _arg)
 
virtual void SetMovingKernelBSplineOrder (unsigned int _arg)
 
virtual void SetNumberOfFixedHistogramBins (unsigned long _arg)
 
virtual void SetNumberOfMovingHistogramBins (unsigned long _arg)
 
virtual void SetUseDerivative (bool _arg)
 
virtual void SetUseExplicitPDFDerivatives (bool _arg)
 
virtual void SetUseFiniteDifferenceDerivative (bool _arg)
 
virtual void UseExplicitPDFDerivativesOff ()
 
virtual void UseExplicitPDFDerivativesOn ()
 
- Public Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual const
FixedImageLimiterType
GetFixedImageLimiter ()
 
virtual double GetFixedLimitRangeRatio () const
 
virtual ImageSamplerTypeGetImageSampler (void) const
 
virtual const
MovingImageDerivativeScalesType
GetMovingImageDerivativeScales ()
 
virtual const
MovingImageLimiterType
GetMovingImageLimiter ()
 
virtual double GetMovingLimitRangeRatio () const
 
virtual double GetRequiredRatioOfValidSamples () const
 
virtual void GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const
 
const AdvancedTransformTypeGetTransform (void) const
 
virtual bool GetUseFixedImageLimiter () const
 
virtual bool GetUseImageSampler () const
 
virtual bool GetUseMovingImageDerivativeScales () const
 
virtual bool GetUseMovingImageLimiter () const
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MetricBase< TElastix >::MovingImageType::ImageDimension)
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, MetricBase< TElastix >::FixedImageType::ImageDimension)
 
virtual void SetFixedImageLimiter (FixedImageLimiterType *_arg)
 
virtual void SetFixedLimitRangeRatio (double _arg)
 
virtual void SetImageSampler (ImageSamplerType *_arg)
 
virtual void SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)
 
virtual void SetMovingImageLimiter (MovingImageLimiterType *_arg)
 
virtual void SetMovingLimitRangeRatio (double _arg)
 
virtual void SetRequiredRatioOfValidSamples (double _arg)
 
virtual void SetTransform (AdvancedTransformType *arg)
 
virtual void SetUseMovingImageDerivativeScales (bool _arg)
 
- Public Member Functions inherited from elastix::MetricBase< TElastix >
virtual void AfterEachIterationBase (void)
 
virtual void BeforeEachResolutionBase (void)
 
virtual ImageSamplerBaseTypeGetAdvancedMetricImageSampler (void) const
 
virtual bool GetAdvancedMetricUseImageSampler (void) const
 
virtual ITKBaseTypeGetAsITKBaseType (void)
 
virtual const ITKBaseTypeGetAsITKBaseType (void) const
 
virtual MeasureType GetCurrentExactMetricValue (void) const
 
virtual bool GetShowExactMetricValue (void) const
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
virtual void SelectNewSamples (void)
 
virtual void SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)
 
- Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationTypeGetConfiguration (void) const
 
virtual ElastixTypeGetElastix (void) const
 
virtual RegistrationPointer GetRegistration (void) const
 
virtual void SetConfiguration (ConfigurationType *_arg)
 
virtual void SetElastix (ElastixType *_arg)
 
- Public Member Functions inherited from elastix::BaseComponent
virtual void AfterEachIteration (void)
 
virtual void AfterEachResolution (void)
 
virtual void AfterEachResolutionBase (void)
 
virtual void AfterRegistration (void)
 
virtual void AfterRegistrationBase (void)
 
virtual int BeforeAll (void)
 
virtual int BeforeAllBase (void)
 
virtual void BeforeRegistration (void)
 
virtual void BeforeRegistrationBase (void)
 
virtual const char * elxGetClassName (void) const
 
virtual const char * GetComponentLabel (void) const
 
virtual void SetComponentLabel (const char *label, unsigned int idx)
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
static Pointer New ()
 

Protected Member Functions

 NormalizedMutualInformationMetric ()
 
virtual ~NormalizedMutualInformationMetric ()
 
- Protected Member Functions inherited from itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual void ComputeLogMarginalPDF (MarginalPDFType &pdf) const
 
virtual MeasureType ComputeNormalizedMutualInformation (MeasureType &jointEntropy) const
 
 ParzenWindowNormalizedMutualInformationImageToImageMetric ()
 
void PrintSelf (std::ostream &os, Indent indent) const
 
virtual ~ParzenWindowNormalizedMutualInformationImageToImageMetric ()
 
- Protected Member Functions inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual void ComputeIncrementalMarginalPDFs (const JointPDFDerivativesType *incrementalPDF, IncrementalMarginalPDFType *fixedIncrementalMarginalPDF, IncrementalMarginalPDFType *movingIncrementalMarginalPDF) const
 
virtual void ComputeMarginalPDF (const JointPDFType *jointPDF, MarginalPDFType &marginalPDF, unsigned int direction) const
 
virtual void ComputePDFs (const ParametersType &parameters) const
 
virtual void ComputePDFsAndIncrementalPDFs (const ParametersType &parameters) const
 
virtual void ComputePDFsAndPDFDerivatives (const ParametersType &parameters) const
 
void EvaluateParzenValues (double parzenWindowTerm, OffsetValueType parzenWindowIndex, const KernelFunctionType *kernel, ParzenValueContainerType &parzenValues) const
 
void EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const
 
virtual void GetValueAndAnalyticDerivative (const ParametersType &, MeasureType &, DerivativeType &) const
 
virtual void GetValueAndFiniteDifferenceDerivative (const ParametersType &, MeasureType &, DerivativeType &) const
 
virtual void InitializeHistograms (void)
 
virtual void InitializeKernels (void)
 
virtual void NormalizeJointPDF (JointPDFType *pdf, double factor) const
 
virtual void NormalizeJointPDFDerivatives (JointPDFDerivativesType *pdf, double factor) const
 
 ParzenWindowHistogramImageToImageMetric ()
 
void PrintSelf (std::ostream &os, Indent indent) const
 
virtual void UpdateJointPDFAndDerivatives (RealType fixedImageValue, RealType movingImageValue, const DerivativeType *imageJacobian, const NonZeroJacobianIndicesType *nzji) const
 
virtual void UpdateJointPDFAndIncrementalPDFs (RealType fixedImageValue, RealType movingImageValue, RealType movingMaskValue, const DerivativeType &movingImageValuesRight, const DerivativeType &movingImageValuesLeft, const DerivativeType &movingMaskValuesRight, const DerivativeType &movingMaskValuesLeft, const NonZeroJacobianIndicesType &nzji) const
 
void UpdateJointPDFDerivatives (const JointPDFIndexType &pdfIndex, double factor, const DerivativeType &imageJacobian, const NonZeroJacobianIndicesType &nzji) const
 
virtual ~ParzenWindowHistogramImageToImageMetric ()
 
- Protected Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
 AdvancedImageToImageMetric ()
 
virtual void CheckForAdvancedTransform (void)
 
virtual void CheckForBSplineInterpolator (void)
 
virtual void CheckNumberOfSamples (unsigned long wanted, unsigned long found) const
 
virtual void ComputeFixedImageExtrema (const FixedImageType *image, const FixedImageRegionType &region)
 
virtual void ComputeMovingImageExtrema (const MovingImageType *image, const MovingImageRegionType &region)
 
virtual bool EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const
 
virtual bool EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
 
virtual void InitializeImageSampler (void) throw ( ExceptionObject )
 
virtual void InitializeLimiters (void)
 
virtual bool IsInsideMovingMask (const MovingImagePointType &point) const
 
void PrintSelf (std::ostream &os, Indent indent) const
 
virtual void SetUseFixedImageLimiter (bool _arg)
 
virtual void SetUseImageSampler (bool _arg)
 
virtual void SetUseMovingImageLimiter (bool _arg)
 
virtual bool TransformPoint (const FixedImagePointType &fixedImagePoint, MovingImagePointType &mappedPoint) const
 
virtual ~AdvancedImageToImageMetric ()
 
- Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType GetExactValue (const ParametersType &parameters)
 
 MetricBase ()
 
virtual ~MetricBase ()
 
- Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
 BaseComponentSE ()
 
virtual ~BaseComponentSE ()
 
- Protected Member Functions inherited from elastix::BaseComponent
 BaseComponent ()
 
virtual ~BaseComponent ()
 

Private Member Functions

 NormalizedMutualInformationMetric (const Self &)
 
void operator= (const Self &)
 

Additional Inherited Members

- Protected Types inherited from itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef
Superclass::BSplineInterpolatorType 
BSplineInterpolatorType
 
typedef
Superclass::CentralDifferenceGradientFilterType 
CentralDifferenceGradientFilterType
 
typedef
Superclass::FixedImageIndexType 
FixedImageIndexType
 
typedef
Superclass::FixedImageIndexValueType 
FixedImageIndexValueType
 
typedef
Superclass::FixedImagePointType 
FixedImagePointType
 
typedef
Superclass::IncrementalMarginalPDFType 
IncrementalMarginalPDFType
 
typedef
Superclass::JointPDFDerivativesIndexType 
JointPDFDerivativesIndexType
 
typedef
Superclass::JointPDFDerivativesRegionType 
JointPDFDerivativesRegionType
 
typedef
Superclass::JointPDFDerivativesSizeType 
JointPDFDerivativesSizeType
 
typedef
Superclass::JointPDFDerivativesType 
JointPDFDerivativesType
 
typedef
Superclass::JointPDFIndexType 
JointPDFIndexType
 
typedef
Superclass::JointPDFRegionType 
JointPDFRegionType
 
typedef
Superclass::JointPDFSizeType 
JointPDFSizeType
 
typedef Superclass::JointPDFType JointPDFType
 
typedef
Superclass::KernelFunctionType 
KernelFunctionType
 
typedef Superclass::MarginalPDFType MarginalPDFType
 
typedef
Superclass::MovingImageContinuousIndexType 
MovingImageContinuousIndexType
 
typedef
Superclass::MovingImageDerivativeType 
MovingImageDerivativeType
 
typedef
Superclass::MovingImageIndexType 
MovingImageIndexType
 
typedef
Superclass::MovingImagePointType 
MovingImagePointType
 
typedef
Superclass::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
 
typedef
Superclass::ParzenValueContainerType 
ParzenValueContainerType
 
typedef Superclass::PDFValueType PDFValueType
 
- Protected Types inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef
Superclass::BSplineInterpolatorType 
BSplineInterpolatorType
 
typedef
Superclass::CentralDifferenceGradientFilterType 
CentralDifferenceGradientFilterType
 
typedef
Superclass::FixedImageIndexType 
FixedImageIndexType
 
typedef
Superclass::FixedImageIndexValueType 
FixedImageIndexValueType
 
typedef
Superclass::FixedImagePointType 
FixedImagePointType
 
typedef
IncrementalMarginalPDFType::IndexType 
IncrementalMarginalPDFIndexType
 
typedef
IncrementalMarginalPDFType::RegionType 
IncrementalMarginalPDFRegionType
 
typedef
IncrementalMarginalPDFType::SizeType 
IncrementalMarginalPDFSizeType
 
typedef Image< PDFValueType, 2 > IncrementalMarginalPDFType
 
typedef
JointPDFDerivativesType::IndexType 
JointPDFDerivativesIndexType
 
typedef
JointPDFDerivativesType::RegionType 
JointPDFDerivativesRegionType
 
typedef
JointPDFDerivativesType::SizeType 
JointPDFDerivativesSizeType
 
typedef Image< PDFValueType, 3 > JointPDFDerivativesType
 
typedef JointPDFType::IndexType JointPDFIndexType
 
typedef JointPDFType::RegionType JointPDFRegionType
 
typedef JointPDFType::SizeType JointPDFSizeType
 
typedef Image< PDFValueType, 2 > JointPDFType
 
typedef KernelFunctionBase
< double
KernelFunctionType
 
typedef Array< PDFValueTypeMarginalPDFType
 
typedef
Superclass::MovingImageContinuousIndexType 
MovingImageContinuousIndexType
 
typedef
Superclass::MovingImageDerivativeType 
MovingImageDerivativeType
 
typedef
Superclass::MovingImageIndexType 
MovingImageIndexType
 
typedef
Superclass::MovingImagePointType 
MovingImagePointType
 
typedef
Superclass::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
 
typedef
FixedImageType::OffsetValueType 
OffsetValueType
 
typedef Array< doubleParzenValueContainerType
 
typedef float PDFValueType
 
- Protected Types inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef
BSplineInterpolateImageFunction
< MovingImageType,
CoordinateRepresentationType,
float
BSplineInterpolatorFloatType
 
typedef
BSplineInterpolateImageFunction
< MovingImageType,
CoordinateRepresentationType,
double
BSplineInterpolatorType
 
typedef GradientImageFilter
< MovingImageType, RealType,
RealType
CentralDifferenceGradientFilterType
 
typedef FixedImageType::IndexType FixedImageIndexType
 
typedef
FixedImageIndexType::IndexValueType 
FixedImageIndexValueType
 
typedef
TransformType::InputPointType 
FixedImagePointType
 
typedef
InterpolatorType::ContinuousIndexType 
MovingImageContinuousIndexType
 
typedef
BSplineInterpolatorType::CovariantVectorType 
MovingImageDerivativeType
 
typedef MovingImageType::IndexType MovingImageIndexType
 
typedef
TransformType::OutputPointType 
MovingImagePointType
 
typedef
AdvancedTransformType::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
 
typedef
ReducedDimensionBSplineInterpolateImageFunction
< MovingImageType,
CoordinateRepresentationType,
double
ReducedBSplineInterpolatorType
 
- Protected Types inherited from elastix::MetricBase< TElastix >
typedef itk::ImageGridSampler
< FixedImageType
ExactMetricImageSamplerType
 
typedef
ExactMetricImageSamplerType::SampleGridSpacingType 
ExactMetricSampleGridSpacingType
 
typedef ITKBaseType::ParametersType ParametersType
 
- Protected Attributes inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
double m_Alpha
 
KernelFunctionType::Pointer m_DerivativeMovingKernel
 
double m_FixedImageBinSize
 
MarginalPDFType m_FixedImageMarginalPDF
 
double m_FixedImageNormalizedMin
 
IncrementalMarginalPDFType::Pointer m_FixedIncrementalMarginalPDFLeft
 
IncrementalMarginalPDFType::Pointer m_FixedIncrementalMarginalPDFRight
 
KernelFunctionType::Pointer m_FixedKernel
 
double m_FixedParzenTermToIndexOffset
 
JointPDFDerivativesType::Pointer m_IncrementalJointPDFLeft
 
JointPDFDerivativesType::Pointer m_IncrementalJointPDFRight
 
JointPDFType::Pointer m_JointPDF
 
JointPDFDerivativesType::Pointer m_JointPDFDerivatives
 
JointPDFRegionType m_JointPDFWindow
 
double m_MovingImageBinSize
 
MarginalPDFType m_MovingImageMarginalPDF
 
double m_MovingImageNormalizedMin
 
IncrementalMarginalPDFType::Pointer m_MovingIncrementalMarginalPDFLeft
 
IncrementalMarginalPDFType::Pointer m_MovingIncrementalMarginalPDFRight
 
KernelFunctionType::Pointer m_MovingKernel
 
double m_MovingParzenTermToIndexOffset
 
DerivativeType m_PerturbedAlphaLeft
 
DerivativeType m_PerturbedAlphaRight
 
- Protected Attributes inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
AdvancedTransformType::Pointer m_AdvancedTransform
 
BSplineInterpolatorType::Pointer m_BSplineInterpolator
 
BSplineInterpolatorFloatType::Pointer m_BSplineInterpolatorFloat
 
CentralDifferenceGradientFilterType::Pointer m_CentralDifferenceGradientFilter
 
FixedImageLimiterType::Pointer m_FixedImageLimiter
 
FixedImageLimiterOutputType m_FixedImageMaxLimit
 
FixedImageLimiterOutputType m_FixedImageMinLimit
 
FixedImagePixelType m_FixedImageTrueMax
 
FixedImagePixelType m_FixedImageTrueMin
 
ImageSamplerPointer m_ImageSampler
 
bool m_InterpolatorIsBSpline
 
bool m_InterpolatorIsBSplineFloat
 
bool m_InterpolatorIsReducedBSpline
 
MovingImageLimiterType::Pointer m_MovingImageLimiter
 
MovingImageLimiterOutputType m_MovingImageMaxLimit
 
MovingImageLimiterOutputType m_MovingImageMinLimit
 
MovingImagePixelType m_MovingImageTrueMax
 
MovingImagePixelType m_MovingImageTrueMin
 
ReducedBSplineInterpolatorType::Pointer m_ReducedBSplineInterpolator
 
bool m_TransformIsAdvanced
 
- Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType m_CurrentExactMetricValue
 
ExactMetricSampleGridSpacingType m_ExactMetricSampleGridSpacing
 
ExactMetricImageSamplerType::Pointer m_ExactMetricSampler
 
bool m_ShowExactMetricValue
 
- Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer m_Configuration
 
ElastixPointer m_Elastix
 
RegistrationPointer m_Registration
 

Detailed Description

template<class TElastix>
class elastix::NormalizedMutualInformationMetric< TElastix >

A metric based on the itk::ParzenWindowNormalizedMutualInformationImageToImageMetric.

The parameters used in this class are:

Parameters:

Metric: Select this metric as follows:
(Metric "NormalizedMutualInformation")

NumberOfHistogramBins: The size of the histogram. Must be given for each resolution, or for all resolutions at once.
example: (NumberOfHistogramBins 32 32 64)
The default is 32 for each resolution.

NumberOfFixedHistogramBins: The size of the histogram in the fixed dimension. Can be given for each resolution, or for all resolutions at once. If not given, NumberOfHistograms is used.
example: (NumberOfFixedHistogramBins 32 32 64)
The default is the value of NumberOfHistograms.

NumberOfMovingHistogramBins: The size of the histogram in the fixed dimension. Can be given for each resolution, or for all resolutions at once. If not given, NumberOfHistograms is used.
example: (NumberOfMovingHistogramBins 32 32 64)
The default is the value of NumberOfHistograms.

FixedKernelBSplineOrder: The B-spline order of the Parzen window, used to estimate the joint histogram. Can be given for each resolution, or for all resolutions at once.
example: (FixedKernelBSplineOrder 0 1 1)
The default value is 0.

MovingKernelBSplineOrder: The B-spline order of the Parzen window, used to estimate the joint histogram. Can be given for each resolution, or for all resolutions at once.
example: (MovingKernelBSplineOrder 3 3 3)
The default value is 3.

FixedLimitRangeRatio: The relative extension of the intensity range of the fixed image.
If your image has gray values from 0 to 1000 and the FixedLimitRangeRatio is 0.001, the joint histogram will expect fixed image gray values from -0.001 to 1000.001. This may be useful if you use high order B-spline interpolator for the fixed image.
example: (FixedLimitRangeRatio 0.001 0.01 0.01)
The default value is 0.01. Can be given for each resolution, or for all resolutions at once.

MovingLimitRangeRatio: The relative extension of the intensity range of the moving image.
If your image has gray values from 0 to 1000 and the MovingLimitRangeRatio is 0.001, the joint histogram will expect moving image gray values from -0.001 to 1000.001. This may be useful if you use high order B-spline interpolator for the moving image.
example: (MovingLimitRangeRatio 0.001 0.01 0.01)
The default value is 0.01. Can be given for each resolution, or for all resolutions at once.

See Also
ParzenWindowNormalizedMutualInformationImageToImageMetric

Definition at line 72 of file elxNormalizedMutualInformationMetric.h.

Member Typedef Documentation

Definition at line 161 of file elxNormalizedMutualInformationMetric.h.

Definition at line 160 of file elxNormalizedMutualInformationMetric.h.

template<class TElastix >
typedef itk::SmartPointer<const Self> elastix::NormalizedMutualInformationMetric< TElastix >::ConstPointer

Definition at line 88 of file elxNormalizedMutualInformationMetric.h.

Typedefs from the superclass.

Definition at line 105 of file elxNormalizedMutualInformationMetric.h.

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Typedef's inherited from Elastix.

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template<class TElastix >
typedef itk::SmartPointer<Self> elastix::NormalizedMutualInformationMetric< TElastix >::Pointer

Definition at line 87 of file elxNormalizedMutualInformationMetric.h.

template<class TElastix >
typedef Superclass1::RealType elastix::NormalizedMutualInformationMetric< TElastix >::RealType

Definition at line 120 of file elxNormalizedMutualInformationMetric.h.

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Standard ITK-stuff.

Definition at line 82 of file elxNormalizedMutualInformationMetric.h.

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template<class TElastix >
typedef MetricBase<TElastix> elastix::NormalizedMutualInformationMetric< TElastix >::Superclass2

Definition at line 86 of file elxNormalizedMutualInformationMetric.h.

template<class TElastix >
typedef TimerType::Pointer elastix::NormalizedMutualInformationMetric< TElastix >::TimerPointer

Typedef for timer.

Definition at line 169 of file elxNormalizedMutualInformationMetric.h.

template<class TElastix >
typedef tmr::Timer elastix::NormalizedMutualInformationMetric< TElastix >::TimerType

Typedef for timer.

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Constructor & Destructor Documentation

template<class TElastix >
elastix::NormalizedMutualInformationMetric< TElastix >::NormalizedMutualInformationMetric ( )
inlineprotected

The constructor.

Definition at line 185 of file elxNormalizedMutualInformationMetric.h.

template<class TElastix >
virtual elastix::NormalizedMutualInformationMetric< TElastix >::~NormalizedMutualInformationMetric ( )
inlineprotectedvirtual

The destructor.

Definition at line 191 of file elxNormalizedMutualInformationMetric.h.

template<class TElastix >
elastix::NormalizedMutualInformationMetric< TElastix >::NormalizedMutualInformationMetric ( const Self )
private

The private constructor.

Member Function Documentation

template<class TElastix >
virtual void elastix::NormalizedMutualInformationMetric< TElastix >::BeforeEachResolution ( void  )
virtual

Execute stuff before each new pyramid resolution:

  • Set the number of histogram bins.
  • Set the CheckNumberOfSamples option.
  • Set the fixed/moving LimitRangeRatio
  • Set the fixed/moving limiter.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
elastix::NormalizedMutualInformationMetric< TElastix >::elxClassNameMacro ( "NormalizedMutualInformation"  )

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "NormalizedMutualInformation")

template<class TElastix >
virtual const char* elastix::NormalizedMutualInformationMetric< TElastix >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
virtual void elastix::NormalizedMutualInformationMetric< TElastix >::Initialize ( void  )
throw (itk::ExceptionObject
)
virtual

Set up a timer to measure the intialisation time and call the Superclass' implementation.

Reimplemented from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >.

template<class TElastix >
elastix::NormalizedMutualInformationMetric< TElastix >::itkStaticConstMacro ( FixedImageDimension  ,
unsigned  int,
FixedImageType::ImageDimension   
)

The fixed image dimension.

template<class TElastix >
elastix::NormalizedMutualInformationMetric< TElastix >::itkStaticConstMacro ( MovingImageDimension  ,
unsigned  int,
MovingImageType::ImageDimension   
)

The moving image dimension.

template<class TElastix >
static Pointer elastix::NormalizedMutualInformationMetric< TElastix >::New ( )
static

Method for creation through the object factory.

template<class TElastix >
void elastix::NormalizedMutualInformationMetric< TElastix >::operator= ( const Self )
private

The private copy constructor.



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