Constructor and Description |
---|
BasicDomain(java.lang.String id_str) |
BasicDomain(java.lang.String id_str,
int from,
int to,
short number,
short total_count,
double per_sequence_evalue,
double per_sequence_score) |
BasicDomain(java.lang.String id_str,
int from,
int to,
short number,
short total_count,
double per_sequence_evalue,
double per_sequence_score,
double per_domain_evalue,
double per_domain_score) |
Modifier and Type | Method and Description |
---|---|
void |
addGoId(GoId go_id) |
int |
compareTo(Domain domain)
Basic domains are compared/sorted based upon their identifiers (case
insensitive) and their numbers.
|
boolean |
equals(java.lang.Object o)
Basic domains are considered equal if they have the same identifier (case
sensitive).
|
DomainId |
getDomainId() |
int |
getFrom() |
GoId |
getGoId(int i) |
short |
getNumber() |
int |
getNumberOfGoIds() |
double |
getPerDomainEvalue() |
double |
getPerDomainScore() |
double |
getPerSequenceEvalue() |
double |
getPerSequenceScore() |
int |
getTo() |
short |
getTotalCount() |
int |
hashCode() |
java.lang.String |
toString() |
java.lang.StringBuffer |
toStringBuffer() |
public BasicDomain(java.lang.String id_str)
public BasicDomain(java.lang.String id_str, int from, int to, short number, short total_count, double per_sequence_evalue, double per_sequence_score)
public BasicDomain(java.lang.String id_str, int from, int to, short number, short total_count, double per_sequence_evalue, double per_sequence_score, double per_domain_evalue, double per_domain_score)
public int compareTo(Domain domain)
compareTo
in interface java.lang.Comparable<Domain>
public boolean equals(java.lang.Object o)
equals
in class java.lang.Object
public DomainId getDomainId()
getDomainId
in interface Domain
public int getNumberOfGoIds()
getNumberOfGoIds
in interface Domain
public double getPerDomainEvalue()
getPerDomainEvalue
in interface Domain
public double getPerDomainScore()
getPerDomainScore
in interface Domain
public double getPerSequenceEvalue()
getPerSequenceEvalue
in interface Domain
public double getPerSequenceScore()
getPerSequenceScore
in interface Domain
public short getTotalCount()
getTotalCount
in interface Domain
public int hashCode()
hashCode
in class java.lang.Object
public java.lang.String toString()
toString
in class java.lang.Object
public java.lang.StringBuffer toStringBuffer()