public class Annotation extends java.lang.Object implements PhylogenyData
Constructor and Description |
---|
Annotation() |
Modifier and Type | Method and Description |
---|---|
java.lang.StringBuffer |
asSimpleText() |
java.lang.StringBuffer |
asText() |
PhylogenyData |
copy()
Creates a new PhylogenyData object with identical values as this
PhylogenyData.
|
Confidence |
getConfidence() |
java.lang.String |
getDesc() |
java.lang.String |
getEvidence() |
PropertiesMap |
getProperties() |
java.lang.String |
getRef() |
java.lang.String |
getSource() |
java.lang.String |
getType() |
Uri |
getUri() |
boolean |
isEqual(PhylogenyData data)
Compares this PhylogenyData to PhylogenyData data.
|
void |
setConfidence(Confidence confidence) |
void |
setDesc(java.lang.String desc) |
void |
setEvidence(java.lang.String evidence) |
void |
setProperties(PropertiesMap property) |
void |
setRef(java.lang.String ref) |
void |
setSource(java.lang.String source) |
void |
setType(java.lang.String type) |
void |
setUri(Uri uri) |
java.lang.StringBuffer |
toNHX() |
void |
toPhyloXML(java.io.Writer writer,
int level,
java.lang.String indentation)
Writes a phyloXML representation of this phylogeny data.
|
java.lang.String |
toString() |
public java.lang.StringBuffer asSimpleText()
asSimpleText
in interface PhylogenyData
public java.lang.StringBuffer asText()
asText
in interface PhylogenyData
public PhylogenyData copy()
PhylogenyData
copy
in interface PhylogenyData
public Confidence getConfidence()
public java.lang.String getDesc()
public java.lang.String getEvidence()
public PropertiesMap getProperties()
public java.lang.String getRef()
public java.lang.String getSource()
public java.lang.String getType()
public Uri getUri()
public boolean isEqual(PhylogenyData data)
PhylogenyData
isEqual
in interface PhylogenyData
public void setConfidence(Confidence confidence)
public void setDesc(java.lang.String desc)
public void setEvidence(java.lang.String evidence)
public void setProperties(PropertiesMap property)
public void setRef(java.lang.String ref)
public void setSource(java.lang.String source)
public void setType(java.lang.String type)
public void setUri(Uri uri)
public java.lang.StringBuffer toNHX()
toNHX
in interface PhylogenyData
public void toPhyloXML(java.io.Writer writer, int level, java.lang.String indentation) throws java.io.IOException
PhylogenyData
toPhyloXML
in interface PhylogenyData
java.io.IOException
public java.lang.String toString()
toString
in class java.lang.Object