public abstract class AbstractUserArgumentProcessor extends java.lang.Object implements UserArgumentProcessor
Modifier and Type | Field and Description |
---|---|
static java.util.List<java.lang.String> |
mandatoryArgs |
static java.lang.String |
newline |
protected StartupParameters |
params |
static java.lang.String |
PDB_DIR
the system property PDB_DIR can be used to configure the
default location for PDB files.
|
Modifier | Constructor and Description |
---|---|
protected |
AbstractUserArgumentProcessor() |
Modifier and Type | Method and Description |
---|---|
abstract StructureAlignment |
getAlgorithm() |
abstract java.lang.String |
getDbSearchLegend() |
java.lang.String |
getDbSearchResult(AFPChain afpChain) |
java.util.List<java.lang.String> |
getMandatoryArgs() |
abstract java.lang.Object |
getParameters() |
void |
process(java.lang.String[] argv)
Process user arguments that have been provided from the command line
|
public static java.lang.String newline
protected StartupParameters params
public static final java.util.List<java.lang.String> mandatoryArgs
public static final java.lang.String PDB_DIR
public abstract StructureAlignment getAlgorithm()
public abstract java.lang.Object getParameters()
public abstract java.lang.String getDbSearchLegend()
public void process(java.lang.String[] argv)
UserArgumentProcessor
process
in interface UserArgumentProcessor
public java.util.List<java.lang.String> getMandatoryArgs()
public java.lang.String getDbSearchResult(AFPChain afpChain)