Public Member Functions |
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| KCFFile () |
| KCFFile (const String &filename, File::OpenMode open_mode=std::ios::in) |
virtual | ~KCFFile () |
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virtual bool | write (const Molecule &molecule) |
virtual bool | write (const System &system) |
virtual bool | read (System &system) |
virtual Molecule * | read () |
const KCFFile & | operator= (const KCFFile &file) |
| GenericMolFile () |
| GenericMolFile (const String &filename, File::OpenMode open_mode=std::ios::in) |
virtual | ~GenericMolFile () |
const GenericMolFile & | operator= (const GenericMolFile &rhs) |
virtual GenericMolFile & | operator>> (System &system) |
virtual GenericMolFile & | operator<< (const System &system) |
virtual GenericMolFile & | operator>> (Molecule &molecule) |
virtual GenericMolFile & | operator<< (const Molecule &molecule) |
| LineBasedFile () |
| Default constructor.
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| LineBasedFile (const String &filename, File::OpenMode open_mode=std::ios::in, bool trim_whitespaces=false) |
void | clear () |
bool | operator== (const LineBasedFile &f) |
bool | operator!= (const LineBasedFile &f) |
const LineBasedFile & | operator= (const LineBasedFile &file) |
Position | getLineNumber () const |
| Get the last line number in the file.
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const String & | getLine () const |
| Return the current line.
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String & | getLine () |
| Return the current line.
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bool | readLine () |
bool | skipLines (Size number=1) |
bool | search (const String &text, bool return_to_start=false) |
bool | search (const String &text, const String &stop, bool return_to_start=false) |
bool | gotoLine (Position line_number) |
void | rewind () |
void | test (const char *file, int line, bool condition, const String &msg) const |
String | getField (Index pos=0, const String "es="", const String &delimiters=String::CHARACTER_CLASS__WHITESPACE) const |
bool | startsWith (const String &text) const |
| Test if the current line starts with text.
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bool | has (const String &text) const |
| Return true if the current line contains text.
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Index | switchString (const std::vector< String > &data) const |
bool | parseColumnFormat (const char *format, Position index, Size length, void *arg) |
void | enableTrimWhitespaces (bool state) |
| Set wheter leading and trailing whitespaces in lines shall be removed.
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bool | trimWhiteSpacesEnabled () const |
| File () |
| File (const String &name, OpenMode open_mode=std::ios::in) |
virtual | ~File () |
bool | isValid () const |
bool | open (const String &name, File::OpenMode open_mode=std::ios::in) |
bool | reopen () |
bool | reopen (File::OpenMode open_mode) |
void | close () |
const String & | getName () const |
void | setName (const String &name) |
const String & | getOriginalName () const |
Size | getSize () |
File::OpenMode | getOpenMode () const |
Type | getType (bool trace_link) const |
bool | copyTo (const String &destination_name, Size buffer_size=4096) |
bool | moveTo (const String &destination_name) |
bool | remove () |
bool | renameTo (const String &new_path) |
bool | truncate (Size size=0) |
std::fstream & | getFileStream () |
TransformationManager & | getTransformationManager () |
const TransformationManager & | getTransformationManager () const |
bool | operator== (const File &file) const |
bool | operator!= (const File &file) const |
bool | isOpen () const |
bool | isClosed () const |
bool | isAccessible () const |
bool | isCanonized () const |
bool | isReadable () const |
bool | isWritable () const |
bool | isExecutable () const |
KEGG KCF file class. This class reads and writes KEGG (Kyoto Encyclopedia of Genes and Genomes) KCF (KEGG Chemical Function) files.
Definition at line 27 of file KCFFile.h.